Microarray analysis uncovers retinoid targets in human bronchial epithelial cells

Y Ma, PH Koza-Taylor, DA DiMattia, L Hames, H Fu… - Oncogene, 2003 - nature.com
Y Ma, PH Koza-Taylor, DA DiMattia, L Hames, H Fu, KH Dragnev, T Turi, JS Beebe…
Oncogene, 2003nature.com
Retinoids, the natural and synthetic derivatives of vitamin A, have a role in cancer treatment
and prevention. There is a need to reveal mechanisms that account for retinoid response or
resistance. This study identified candidate all-trans-retinoic acid (RA) target genes linked to
growth suppression in BEAS-2B human bronchial epithelial cells. Microarray analyses were
performed using Affymetrix arrays. A total of 11 RA-induced species were validated by
reverse transcription polymerase chain reaction (RT-PCR), Western or Northern analyses …
Abstract
Retinoids, the natural and synthetic derivatives of vitamin A, have a role in cancer treatment and prevention. There is a need to reveal mechanisms that account for retinoid response or resistance. This study identified candidate all-trans-retinoic acid (RA) target genes linked to growth suppression in BEAS-2B human bronchial epithelial cells. Microarray analyses were performed using Affymetrix arrays. A total of 11 RA-induced species were validated by reverse transcription polymerase chain reaction (RT-PCR), Western or Northern analyses. Three of these species were novel candidate RA-target genes in human bronchial epithelial cells. These included: placental bone morphogenetic protein (PLAB), polyamine oxidase isoform 1 (PAOh1) and E74-like factor 3 (ELF3). Expression patterns were studied in RA-resistant BEAS-2B-R1 cells. In BEAS-2B-R1 cells, RA dysregulated the expression of the putative lymphocyte G0/G1 switch gene (G0S2), heme oxygenase 1 (HMOX1), tumor necrosis factor-α-induced protein 2 (TNFAIP2), inhibitor of DNA binding 1 (Id1), fos-like antigen 1 (FOSL1), transglutaminase 2 (TGM2), asparagine synthetase (ASNS), PLAB, PAOh1 and ELF3, while prominent induction of insulin-like growth-factor-binding protein 6 (IGFBP6) still occurred. In summary, this study identified 11 candidate RA-target genes in human bronchial epithelial cells including three novel species. Expression studies in BEAS-2B-R1 cells indicated that several were directly implicated in RA signaling, since their aberrant expression was linked to RA resistance of human bronchial epithelial cells.
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