[PDF][PDF] Sarbecovirus ORF6 proteins hamper induction of interferon signaling

I Kimura, Y Konno, K Uriu, K Hopfensperger, D Sauter… - Cell reports, 2021 - cell.com
I Kimura, Y Konno, K Uriu, K Hopfensperger, D Sauter, S Nakagawa, K Sato
Cell reports, 2021cell.com
The presence of an ORF6 gene distinguishes sarbecoviruses such as severe acute
respiratory syndrome coronavirus (SARS-CoV) and SARS-CoV-2 from other
betacoronaviruses. Here we show that ORF6 inhibits induction of innate immune signaling,
including upregulation of type I interferon (IFN) upon viral infection as well as type I and III
IFN signaling. Intriguingly, ORF6 proteins from SARS-CoV-2 lineages are more efficient
antagonists of innate immunity than their orthologs from SARS-CoV lineages. Mutational …
Summary
The presence of an ORF6 gene distinguishes sarbecoviruses such as severe acute respiratory syndrome coronavirus (SARS-CoV) and SARS-CoV-2 from other betacoronaviruses. Here we show that ORF6 inhibits induction of innate immune signaling, including upregulation of type I interferon (IFN) upon viral infection as well as type I and III IFN signaling. Intriguingly, ORF6 proteins from SARS-CoV-2 lineages are more efficient antagonists of innate immunity than their orthologs from SARS-CoV lineages. Mutational analyses identified residues E46 and Q56 as important determinants of the antagonistic activity of SARS-CoV-2 ORF6. Moreover, we show that the anti-innate immune activity of ORF6 depends on its C-terminal region and that ORF6 inhibits nuclear translocation of IRF3. Finally, we identify naturally occurring frameshift/nonsense mutations that result in an inactivating truncation of ORF6 in approximately 0.2% of SARS-CoV-2 isolates. Our findings suggest that ORF6 contributes to the poor IFN activation observed in individuals with coronavirus disease 2019 (COVID-19).
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