Efficient low-cost chromatin profiling with CUT&Tag

HS Kaya-Okur, DH Janssens, JG Henikoff, K Ahmad… - Nature protocols, 2020 - nature.com
HS Kaya-Okur, DH Janssens, JG Henikoff, K Ahmad, S Henikoff
Nature protocols, 2020nature.com
Abstract We recently introduced Cleavage Under Targets & Tagmentation (CUT&Tag), an
epigenomic profiling strategy in which antibodies are bound to chromatin proteins in situ in
permeabilized nuclei. These antibodies are then used to tether the cut-and-paste
transposase Tn5. Activation of the transposase simultaneously cleaves DNA and adds
adapters ('tagmentation') for paired-end DNA sequencing. Here, we introduce a streamlined
CUT&Tag protocol that suppresses DNA accessibility artefacts to ensure high-fidelity …
Abstract
We recently introduced Cleavage Under Targets & Tagmentation (CUT&Tag), an epigenomic profiling strategy in which antibodies are bound to chromatin proteins in situ in permeabilized nuclei. These antibodies are then used to tether the cut-and-paste transposase Tn5. Activation of the transposase simultaneously cleaves DNA and adds adapters (‘tagmentation’) for paired-end DNA sequencing. Here, we introduce a streamlined CUT&Tag protocol that suppresses DNA accessibility artefacts to ensure high-fidelity mapping of the antibody-targeted protein and improves the signal-to-noise ratio over current chromatin profiling methods. Streamlined CUT&Tag can be performed in a single PCR tube, from cells to amplified libraries, providing low-cost genome-wide chromatin maps. By simplifying library preparation CUT&Tag requires less than a day at the bench, from live cells to sequencing-ready barcoded libraries. As a result of low background levels, barcoded and pooled CUT&Tag libraries can be sequenced for as little as $25 per sample. This enables routine genome-wide profiling of chromatin proteins and modifications and requires no special skills or equipment.
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