Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN
D Farré, R Roset, M Huerta, JE Adsuara… - Nucleic acids …, 2003 - academic.oup.com
Nucleic acids research, 2003•academic.oup.com
In this paper we present several web-based tools to identify conserved patterns in
sequences. In particular we present details on the functionality of PROMO version 2.0, a
program for the prediction of transcription factor binding site in a single sequence or in a
group of related sequences and, of MALGEN, a tool to visualize sequence correspondences
among long DNA sequences. The web tools and associated documentation can be
accessed at http://www. lsi. upc. es/~ alggen (RESEARCH link).
sequences. In particular we present details on the functionality of PROMO version 2.0, a
program for the prediction of transcription factor binding site in a single sequence or in a
group of related sequences and, of MALGEN, a tool to visualize sequence correspondences
among long DNA sequences. The web tools and associated documentation can be
accessed at http://www. lsi. upc. es/~ alggen (RESEARCH link).
Abstract
In this paper we present several web-based tools to identify conserved patterns in sequences. In particular we present details on the functionality of PROMO version 2.0, a program for the prediction of transcription factor binding site in a single sequence or in a group of related sequences and, of MALGEN, a tool to visualize sequence correspondences among long DNA sequences. The web tools and associated documentation can be accessed at http://www.lsi.upc.es/~alggen (RESEARCH link).
Oxford University Press