[PDF][PDF] Interferon-γ represses M2 gene expression in human macrophages by disassembling enhancers bound by the transcription factor MAF

K Kang, SH Park, J Chen, Y Qiao, E Giannopoulou… - Immunity, 2017 - cell.com
K Kang, SH Park, J Chen, Y Qiao, E Giannopoulou, K Berg, A Hanidu, J Li, G Nabozny…
Immunity, 2017cell.com
Mechanisms by which interferon (IFN)-γ activates genes to promote macrophage activation
are well studied, but little is known about mechanisms and functions of IFN-γ-mediated gene
repression. We used an integrated transcriptomic and epigenomic approach to analyze
chromatin accessibility, histone modifications, transcription-factor binding, and gene
expression in IFN-γ-primed human macrophages. IFN-γ suppressed basal expression of
genes corresponding to an" M2"-like homeostatic and reparative phenotype. IFN-γ …
Mechanisms by which interferon (IFN)-γ activates genes to promote macrophage activation are well studied, but little is known about mechanisms and functions of IFN-γ-mediated gene repression. We used an integrated transcriptomic and epigenomic approach to analyze chromatin accessibility, histone modifications, transcription-factor binding, and gene expression in IFN-γ-primed human macrophages. IFN-γ suppressed basal expression of genes corresponding to an "M2"-like homeostatic and reparative phenotype. IFN-γ repressed genes by suppressing the function of enhancers enriched for binding by transcription factor MAF. Mechanistically, IFN-γ disassembled a subset of enhancers by inducing coordinate suppression of binding by MAF, lineage-determining transcription factors, and chromatin accessibility. Genes associated with MAF-binding enhancers were suppressed in macrophages isolated from rheumatoid-arthritis patients, revealing a disease-associated signature of IFN-γ-mediated repression. These results identify enhancer inactivation and disassembly as a mechanism of IFN-γ-mediated gene repression and reveal that MAF regulates the macrophage enhancer landscape and is suppressed by IFN-γ to augment macrophage activation.
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