[PDF][PDF] Single-cell profiling defines transcriptomic signatures specific to tumor-reactive versus virus-responsive CD4+ T cells

A Magen, J Nie, T Ciucci, S Tamoutounour, Y Zhao… - Cell reports, 2019 - cell.com
A Magen, J Nie, T Ciucci, S Tamoutounour, Y Zhao, M Mehta, B Tran, DB McGavern
Cell reports, 2019cell.com
Most current tumor immunotherapy strategies leverage cytotoxic CD8+ T cells. Despite
evidence for clinical potential of CD4+ tumor-infiltrating lymphocytes (TILs), their functional
diversity limits our ability to harness their activity. Here, we use single-cell mRNA
sequencing to analyze the response of tumor-specific CD4+ TILs and draining lymph node
(dLN) T cells. Computational approaches to characterize subpopulations identify TIL
transcriptomic patterns strikingly distinct from acute and chronic anti-viral responses and …
Summary
Most current tumor immunotherapy strategies leverage cytotoxic CD8+ T cells. Despite evidence for clinical potential of CD4+ tumor-infiltrating lymphocytes (TILs), their functional diversity limits our ability to harness their activity. Here, we use single-cell mRNA sequencing to analyze the response of tumor-specific CD4+ TILs and draining lymph node (dLN) T cells. Computational approaches to characterize subpopulations identify TIL transcriptomic patterns strikingly distinct from acute and chronic anti-viral responses and dominated by diversity among T-bet-expressing T helper type 1 (Th1)-like cells. In contrast, the dLN response includes T follicular helper (Tfh) cells but lacks Th1 cells. We identify a type I interferon-driven signature in Th1-like TILs and show that it is found in human cancers, in which it is negatively associated with response to checkpoint therapy. Our study provides a proof-of-concept methodology to characterize tumor-specific CD4+ T cell effector programs. Targeting these programs should help improve immunotherapy strategies.
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