Identifying the amylome, proteins capable of forming amyloid-like fibrils

L Goldschmidt, PK Teng, R Riek… - Proceedings of the …, 2010 - National Acad Sciences
L Goldschmidt, PK Teng, R Riek, D Eisenberg
Proceedings of the National Academy of Sciences, 2010National Acad Sciences
The amylome is the universe of proteins that are capable of forming amyloid-like fibrils. Here
we investigate the factors that enable a protein to belong to the amylome. A major factor is
the presence in the protein of a segment that can form a tightly complementary interface with
an identical segment, which permits the formation of a steric zipper—two self-
complementary beta sheets that form the spine of an amyloid fibril. Another factor is sufficient
conformational freedom of the self-complementary segment to interact with other molecules …
The amylome is the universe of proteins that are capable of forming amyloid-like fibrils. Here we investigate the factors that enable a protein to belong to the amylome. A major factor is the presence in the protein of a segment that can form a tightly complementary interface with an identical segment, which permits the formation of a steric zipper—two self-complementary beta sheets that form the spine of an amyloid fibril. Another factor is sufficient conformational freedom of the self-complementary segment to interact with other molecules. Using RNase A as a model system, we validate our fibrillogenic predictions by the 3D profile method based on the crystal structure of NNQQNY and demonstrate that a specific residue order is required for fiber formation. Our genome-wide analysis revealed that self-complementary segments are found in almost all proteins, yet not all proteins form amyloids. The implication is that chaperoning effects have evolved to constrain self-complementary segments from interaction with each other.
National Acad Sciences