[HTML][HTML] QuPath: Open source software for digital pathology image analysis

P Bankhead, MB Loughrey, JA Fernández… - Scientific reports, 2017 - nature.com
P Bankhead, MB Loughrey, JA Fernández, Y Dombrowski, DG McArt, PD Dunne, S McQuaid…
Scientific reports, 2017nature.com
QuPath is new bioimage analysis software designed to meet the growing need for a user-
friendly, extensible, open-source solution for digital pathology and whole slide image
analysis. In addition to offering a comprehensive panel of tumor identification and high-
throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-
processing and scripting functionality, and an extensible platform with which to develop and
share new algorithms to analyze complex tissue images. Furthermore, QuPath's flexible …
Abstract
QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-processing and scripting functionality, and an extensible platform with which to develop and share new algorithms to analyze complex tissue images. Furthermore, QuPath’s flexible design makes it suitable for a wide range of additional image analysis applications across biomedical research.
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