The vienna RNA websuite

AR Gruber, R Lorenz, SH Bernhart… - Nucleic acids …, 2008 - academic.oup.com
Nucleic acids research, 2008academic.oup.com
Abstract The Vienna RNA Websuite is a comprehensive collection of tools for folding, design
and analysis of RNA sequences. It provides a web interface to the most commonly used
programs of the Vienna RNA package. Among them, we find folding of single and aligned
sequences, prediction of RNA–RNA interactions, and design of sequences with a given
structure. Additionally, we provide analysis of folding landscapes using the barriers program
and structural RNA alignments using LocARNA. The web server together with software …
Abstract
The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package. Among them, we find folding of single and aligned sequences, prediction of RNA–RNA interactions, and design of sequences with a given structure. Additionally, we provide analysis of folding landscapes using the barriers program and structural RNA alignments using LocARNA. The web server together with software packages for download is freely accessible at http://rna.tbi.univie.ac.at/ .
Oxford University Press