Cytoscape 2.8: new features for data integration and network visualization

ME Smoot, K Ono, J Ruscheinski, PL Wang… - …, 2011 - academic.oup.com
ME Smoot, K Ono, J Ruscheinski, PL Wang, T Ideker
Bioinformatics, 2011academic.oup.com
Cytoscape is a popular bioinformatics package for biological network visualization and data
integration. Version 2.8 introduces two powerful new features—Custom Node Graphics and
Attribute Equations—which can be used jointly to greatly enhance Cytoscape's data
integration and visualization capabilities. Custom Node Graphics allow an image to be
projected onto a node, including images generated dynamically or at remote locations.
Attribute Equations provide Cytoscape with spreadsheet-like functionality in which the value …
Abstract
Summary: Cytoscape is a popular bioinformatics package for biological network visualization and data integration. Version 2.8 introduces two powerful new features—Custom Node Graphics and Attribute Equations—which can be used jointly to greatly enhance Cytoscape's data integration and visualization capabilities. Custom Node Graphics allow an image to be projected onto a node, including images generated dynamically or at remote locations. Attribute Equations provide Cytoscape with spreadsheet-like functionality in which the value of an attribute is computed dynamically as a function of other attributes and network properties.
Availability and implementation: Cytoscape is a desktop Java application released under the Library Gnu Public License (LGPL). Binary install bundles and source code for Cytoscape 2.8 are available for download from http://cytoscape.org.
Contact:  msmoot@ucsd.edu
Oxford University Press