Construction of diverse adeno-associated viral libraries for directed evolution of enhanced gene delivery vehicles

JT Koerber, N Maheshri, BK Kaspar, DV Schaffer - Nature protocols, 2006 - nature.com
JT Koerber, N Maheshri, BK Kaspar, DV Schaffer
Nature protocols, 2006nature.com
Rational design of improved gene delivery vehicles is a challenging and potentially time-
consuming process. As an alternative approach, directed evolution can provide a rapid and
efficient means for identifying novel proteins with improved function. Here we describe a
methodology for generating very large, random adeno-associated viral (AAV) libraries that
can be selected for a desired function. First, the AAV2 cap gene is amplified in an error-
prone PCR reaction and further diversified through a staggered extension process. The …
Abstract
Rational design of improved gene delivery vehicles is a challenging and potentially time-consuming process. As an alternative approach, directed evolution can provide a rapid and efficient means for identifying novel proteins with improved function. Here we describe a methodology for generating very large, random adeno-associated viral (AAV) libraries that can be selected for a desired function. First, the AAV2 cap gene is amplified in an error-prone PCR reaction and further diversified through a staggered extension process. The resulting PCR product is then cloned into pSub2 to generate a diverse (>106) AAV2 plasmid library. Finally, the AAV2 plasmid library is used to package a diverse pool of mutant AAV2 virions, such that particles are composed of a mutant AAV genome surrounded by the capsid proteins encoded in that genome, which can be used for functional screening and evolution. This procedure can be performed in approximately 2 weeks.
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