[HTML][HTML] A universal live cell barcoding-platform for multiplexed human single cell analysis

FJ Hartmann, EF Simonds, SC Bendall - Scientific reports, 2018 - nature.com
Scientific reports, 2018nature.com
Single-cell barcoding enables the combined processing and acquisition of multiple
individual samples as one. This maximizes assay efficiency and eliminates technical
variability in both sample preparation and analysis. Remaining challenges are the
barcoding of live, unprocessed cells to increase downstream assay performance combined
with the flexibility of the approach towards a broad range of cell types. To that end, we
developed a novel antibody-based platform that allows the robust barcoding of live human …
Abstract
Single-cell barcoding enables the combined processing and acquisition of multiple individual samples as one. This maximizes assay efficiency and eliminates technical variability in both sample preparation and analysis. Remaining challenges are the barcoding of live, unprocessed cells to increase downstream assay performance combined with the flexibility of the approach towards a broad range of cell types. To that end, we developed a novel antibody-based platform that allows the robust barcoding of live human cells for mass cytometry (CyTOF). By targeting both the MHC class I complex (beta-2-microglobulin) and a broadly expressed sodium-potassium ATPase-subunit (CD298) with platinum-conjugated antibodies, human immune cells, stem cells as well as tumor cells could be multiplexed in the same single-cell assay. In addition, we present a novel palladium-based covalent viability reagent compatible with this barcoding strategy. Altogether, this platform enables mass cytometry-based, live-cell barcoding across a multitude of human sample types and provides a scheme for multiplexed barcoding of human single-cell assays in general.
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