Sparse inverse covariance estimation with the graphical lasso

J Friedman, T Hastie, R Tibshirani - Biostatistics, 2008 - academic.oup.com
Biostatistics, 2008academic.oup.com
We consider the problem of estimating sparse graphs by a lasso penalty applied to the
inverse covariance matrix. Using a coordinate descent procedure for the lasso, we develop
a simple algorithm—the graphical lasso—that is remarkably fast: It solves a 1000-node
problem (∼ 500000 parameters) in at most a minute and is 30–4000 times faster than
competing methods. It also provides a conceptual link between the exact problem and the
approximation suggested by Meinshausen and Bühlmann (2006). We illustrate the method …
Abstract
We consider the problem of estimating sparse graphs by a lasso penalty applied to the inverse covariance matrix. Using a coordinate descent procedure for the lasso, we develop a simple algorithm—the graphical lasso—that is remarkably fast: It solves a 1000-node problem (∼500000 parameters) in at most a minute and is 30–4000 times faster than competing methods. It also provides a conceptual link between the exact problem and the approximation suggested by Meinshausen and Bühlmann (2006). We illustrate the method on some cell-signaling data from proteomics.
Oxford University Press