[HTML][HTML] Promiscuous antibodies characterised by their physico-chemical properties: From sequence to structure and back

JMJ Laffy, T Dodev, JA Macpherson… - Progress in biophysics …, 2017 - Elsevier
JMJ Laffy, T Dodev, JA Macpherson, C Townsend, HC Lu, D Dunn-Walters, F Fraternali
Progress in biophysics and molecular biology, 2017Elsevier
Human B cells produce antibodies, which bind to their cognate antigen based on distinct
molecular properties of the antibody CDR loop. We have analysed a set of 10 antibodies
showing a clear difference in their binding properties to a panel of antigens, resulting in two
subsets of antibodies with a distinct binding phenotype. We call the observed binding
multiplicity 'promiscuous' and selected physico-chemical CDRH3 characteristics and
conformational preferences may characterise these promiscuous antibodies. To classify …
Abstract
Human B cells produce antibodies, which bind to their cognate antigen based on distinct molecular properties of the antibody CDR loop. We have analysed a set of 10 antibodies showing a clear difference in their binding properties to a panel of antigens, resulting in two subsets of antibodies with a distinct binding phenotype. We call the observed binding multiplicity ‘promiscuous’ and selected physico-chemical CDRH3 characteristics and conformational preferences may characterise these promiscuous antibodies. To classify CDRH3 physico-chemical properties playing a role in their binding properties, we used statistical analyses of the sequences annotated by Kidera factors. To characterise structure-function requirements for antigen binding multiplicity we employed Molecular Modelling and Monte Carlo based coarse-grained simulations. The ability to predict the molecular causes of promiscuous, multi-binding behaviour would greatly improve the efficiency of the therapeutic antibody discovery process.
Elsevier