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Direct pharmacological targeting of asparagine synthetase to overcome resistance to L-asparaginase in ALL therapy
Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang
Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang
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Research Article Hematology Metabolism

Direct pharmacological targeting of asparagine synthetase to overcome resistance to L-asparaginase in ALL therapy

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Abstract

Acute lymphoblastic leukemia (ALL) is the most common pediatric cancer, arising from both B and T cell lineages (B-ALL and T-ALL). Current therapy exploits ALL cells’ low expression of asparagine synthetase (ASNS) by using L-asparaginase, a bacterial enzyme that depletes circulating asparagine. However, resistance can emerge through induction of ASNS, mediated in part by the amino acid stress sensor GCN2. In this study, we addressed the efficacy of L-asparaginase in combination with genetic or pharmacological inhibition of GCN2 and the ASNS inhibitor ASX-173. Using a KrasG12D-driven mouse model of T-ALL, we found that GCN2 is dispensable for leukemogenesis. However, genetic inactivation or pharmacologic inhibition of GCN2 sensitized ALL cells to asparagine depletion, correlating with impaired ASNS induction. While GCN2 targeting enhanced sensitivity to asparagine depletion, a subset of Gcn2–/– T-ALL cells retained high ASNS expression and remained resistant to L-asparaginase. Likewise, some human T-ALL cells with elevated ASNS levels were refractory to GCN2 inhibition even under asparagine-depleted conditions. When combined with L-asparaginase, ASX-173 effectively eliminated ASNShi leukemic cells in vitro and in vivo. These findings suggest that direct targeting of ASNS provides therapeutic benefit in leukemias that express high levels of ASNS and are resistant to GCN2 inhibition under asparagine-depleted conditions.

Authors

Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang

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Figure 5

ASX-173 overcomes L-asparaginase resistance in ALL cells due to induced ASNS expression independent of GCN2.

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ASX-173 overcomes L-asparaginase resistance in ALL cells due to induced ...
(A) KrasG12D;Lck-Cre mice were crossed with AsnsloxP/loxP mice (32). Mouse T-ALL lines from 2 Asns–/– mice (lines 2 and 3) were treated with PEG for 16 hours. A WT mouse T-ALL line was used as a control. ATF4 and ASNS were assessed by Western blot. (B) Mouse T-ALL lines in A were treated with PEG for 3 days and cell death was recorded by trypan blue staining. (C) Basal ASNS expression was measured by Western blot analysis in a panel of human hematological cancer cell lines. ALL (RS4;11, Reh, Nalm-6, HPB-ALL, KOPT-K1, Jurkat), Burkitt lymphoma (BL) (Raji and Ramos), acute myeloid leukemia (AML) (MV4;11, Molm-14, HL-60), and multiple myeloma (MM) (H929, U266). (D) Human T-ALL Jurkat cells and mouse T-ALL Gcn2–/– line 7 from Figure 4A were grown with or without asparagine for 2 days, in the presence of a range of ASX-173 doses (2–1024 nM). IC50 values were measured via MTT assay. (E) IC50 values from D and Supplemental Figure 4A were plotted against basal ASNS expression from C. (F) Jurkat cells were treated with ASX-173 (125 nM) in the presence or absence of exogenous asparagine for 16 hours. Intracellular asparagine levels were measured by liquid chromatograph–mass spectrometry (LC-MS). Statistical significance was determined using 1-way ANOVA. **P < 0.01; ****P < 0.0001. (G) Heatmap showing intracellular levels of amino acids in Jurkat cells treated in F (n = 3). (H) Jurkat, H929, and Ramos cells were cultured with or without asparagine in the presence or absence of ASX-173 (125 nM) for 24 hours. PARP, p-GCN2 (T899), ATF4, and ASNS proteins were assessed via Western blot analysis.

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