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Direct pharmacological targeting of asparagine synthetase to overcome resistance to L-asparaginase in ALL therapy
Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang
Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang
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Research Article Hematology Metabolism

Direct pharmacological targeting of asparagine synthetase to overcome resistance to L-asparaginase in ALL therapy

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Abstract

Acute lymphoblastic leukemia (ALL) is the most common pediatric cancer, arising from both B and T cell lineages (B-ALL and T-ALL). Current therapy exploits ALL cells’ low expression of asparagine synthetase (ASNS) by using L-asparaginase, a bacterial enzyme that depletes circulating asparagine. However, resistance can emerge through induction of ASNS, mediated in part by the amino acid stress sensor GCN2. In this study, we addressed the efficacy of L-asparaginase in combination with genetic or pharmacological inhibition of GCN2 and the ASNS inhibitor ASX-173. Using a KrasG12D-driven mouse model of T-ALL, we found that GCN2 is dispensable for leukemogenesis. However, genetic inactivation or pharmacologic inhibition of GCN2 sensitized ALL cells to asparagine depletion, correlating with impaired ASNS induction. While GCN2 targeting enhanced sensitivity to asparagine depletion, a subset of Gcn2–/– T-ALL cells retained high ASNS expression and remained resistant to L-asparaginase. Likewise, some human T-ALL cells with elevated ASNS levels were refractory to GCN2 inhibition even under asparagine-depleted conditions. When combined with L-asparaginase, ASX-173 effectively eliminated ASNShi leukemic cells in vitro and in vivo. These findings suggest that direct targeting of ASNS provides therapeutic benefit in leukemias that express high levels of ASNS and are resistant to GCN2 inhibition under asparagine-depleted conditions.

Authors

Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang

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Figure 4

GCN2 inactivation drives GCN2-independent expression of ASNS to confer L-asparaginase resistance.

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GCN2 inactivation drives GCN2-independent expression of ASNS to confer L...
(A) Gcn2–/– T-ALL lines 1, 3, 5, 7, 2, 4, and 10 were treated with PEG for 16 hours. GCN2, ASNS, and ATF4 proteins were assessed by Western blot. (B) T-ALL lines in A were subjected to PEG treatment or untreated (UT) for 3 days, and cell death percentage was recorded by trypan blue staining. (C and D) Schematic illustration of a secondary T-ALL model established by using Gcn2–/– primary KrasG12D;Lck-Cre leukemia cells. PEG was given in 2 doses on days 10 and 34 after transplantation. Kaplan-Meier curve comparing survival between the untreated and PEG-treated mice. Statistical comparison between the 2 groups was done using the log-rank (Mantel-Cox) test. (E) IHC staining of ASNS from the spleen of mice euthanized on day 18 (untreated), day 35 (PEG), and day 42 (PEG). Representative microscopy images were obtained at ×5 or ×20 magnification, as indicated. (F and G) Six single-cell-derived clones from the same untreated spleen tissue in E were subjected to PEG treatment for 16 hours, and protein lysates were subjected to Western blotting analysis for ASNS (F). Cell death percentage following PEG treatment for 3 days were recorded (G). ****P < 0.0001 by 2-way ANOVA. (H) DNA methylation status in the CpG island of the Asns promoter was determined by bisulfite sequencing in Gcn2–/– lines 2, 4, 7, and clone D. Results are shown as heatmaps. The percentages of methylated CpG are indicated on the right of each panel. TSS, transcription start site. (I) Asns mRNA levels from the cells in H were assessed by qPCR.

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