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Direct pharmacological targeting of asparagine synthetase to overcome resistance to L-asparaginase in ALL therapy
Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang
Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang
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Research Article Hematology Metabolism

Direct pharmacological targeting of asparagine synthetase to overcome resistance to L-asparaginase in ALL therapy

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Abstract

Acute lymphoblastic leukemia (ALL) is the most common pediatric cancer, arising from both B and T cell lineages (B-ALL and T-ALL). Current therapy exploits ALL cells’ low expression of asparagine synthetase (ASNS) by using L-asparaginase, a bacterial enzyme that depletes circulating asparagine. However, resistance can emerge through induction of ASNS, mediated in part by the amino acid stress sensor GCN2. In this study, we addressed the efficacy of L-asparaginase in combination with genetic or pharmacological inhibition of GCN2 and the ASNS inhibitor ASX-173. Using a KrasG12D-driven mouse model of T-ALL, we found that GCN2 is dispensable for leukemogenesis. However, genetic inactivation or pharmacologic inhibition of GCN2 sensitized ALL cells to asparagine depletion, correlating with impaired ASNS induction. While GCN2 targeting enhanced sensitivity to asparagine depletion, a subset of Gcn2–/– T-ALL cells retained high ASNS expression and remained resistant to L-asparaginase. Likewise, some human T-ALL cells with elevated ASNS levels were refractory to GCN2 inhibition even under asparagine-depleted conditions. When combined with L-asparaginase, ASX-173 effectively eliminated ASNShi leukemic cells in vitro and in vivo. These findings suggest that direct targeting of ASNS provides therapeutic benefit in leukemias that express high levels of ASNS and are resistant to GCN2 inhibition under asparagine-depleted conditions.

Authors

Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang

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Figure 3

A small-molecule inhibitor of GCN2 sensitizes ALL cells to asparagine depletion.

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A small-molecule inhibitor of GCN2 sensitizes ALL cells to asparagine de...
(A) Gcn2+/+ lines 1 and 2, from Figure 2A, were treated with or without PEG (0.01 IU/mL) in the presence or absence of GCN2iB (2.5 μM). Cell viability was recorded on day 3. Statistical significance was determined using 2-way ANOVA. ****P < 0.0001. (B and C) Gcn2+/+ lines 1 and 2 were treated as described in A for 16 hours. ASNS, ATF4, and PARP protein levels were assessed by Western blot (B), and ASNS mRNA was measured by qPCR (C). (D) Human T-ALL cell lines, KOPT-K1, HPB-ALL, and Jurkat were grown with or without exogenous asparagine in the presence or absence of GCN2iB (2.5 μM) for 24 hours. ASNS protein level was detected by Western blot. (E) KOPT-K1, HPB-ALL, and Jurkat cells were treated with GCN2iB (2.5 μM) for 3 days in the presence or absence of exogenous asparagine. Population doublings on day 3 were recorded. Statistical significance was determined using 2-way ANOVA. *P < 0.05; ****P < 0.0001. (F) Schematic illustration of a secondary KrasG12D T-ALL model. KrasG12D;Lck-Cre;Gcn2+/+ primary leukemic spleen cells were transplanted into lethally irradiated mice. GCN2iB was administered daily via oral gavage at 30 mg/kg for 5 days starting at 10 days after transplantation. PEG was administered on day 13 after transplantation and mice were euthanized on day 18. (G) Images of representative spleen from mice in F. (H) Spleen weight of the mice treated in G were recorded, and the Brown-Forsythe ANOVA test was used to determine the P values. *P < 0.05; ****P < 0.0001. (I) IHC staining of ASNS (top) and H&E staining (bottom) of spleen from mice treated in G. Representative microscopy images were obtained at ×5 or ×20 magnification as indicated.

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