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Direct pharmacological targeting of asparagine synthetase to overcome resistance to L-asparaginase in ALL therapy
Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang
Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang
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Research Article Hematology Metabolism

Direct pharmacological targeting of asparagine synthetase to overcome resistance to L-asparaginase in ALL therapy

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Abstract

Acute lymphoblastic leukemia (ALL) is the most common pediatric cancer, arising from both B and T cell lineages (B-ALL and T-ALL). Current therapy exploits ALL cells’ low expression of asparagine synthetase (ASNS) by using L-asparaginase, a bacterial enzyme that depletes circulating asparagine. However, resistance can emerge through induction of ASNS, mediated in part by the amino acid stress sensor GCN2. In this study, we addressed the efficacy of L-asparaginase in combination with genetic or pharmacological inhibition of GCN2 and the ASNS inhibitor ASX-173. Using a KrasG12D-driven mouse model of T-ALL, we found that GCN2 is dispensable for leukemogenesis. However, genetic inactivation or pharmacologic inhibition of GCN2 sensitized ALL cells to asparagine depletion, correlating with impaired ASNS induction. While GCN2 targeting enhanced sensitivity to asparagine depletion, a subset of Gcn2–/– T-ALL cells retained high ASNS expression and remained resistant to L-asparaginase. Likewise, some human T-ALL cells with elevated ASNS levels were refractory to GCN2 inhibition even under asparagine-depleted conditions. When combined with L-asparaginase, ASX-173 effectively eliminated ASNShi leukemic cells in vitro and in vivo. These findings suggest that direct targeting of ASNS provides therapeutic benefit in leukemias that express high levels of ASNS and are resistant to GCN2 inhibition under asparagine-depleted conditions.

Authors

Rodney Claude, Sankalp Srivastava, Kirk A. Staschke, Carlos Mellado-Fritz, Shaoxiong Chen, Lei Liu, Minghua Zhong, Harish Kothandaraman, Nadia A. Lanman, Utpal Davé, Sandeep Batra, Jiehao Zhou, Yue Fang, Chi Zhang, Reuben Kapur, Jing Fan, Ronald C. Wek, Ji Zhang

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Figure 2

GCN2 deficiency sensitizes ALL cells to asparagine depletion.

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GCN2 deficiency sensitizes ALL cells to asparagine depletion.
(A) Gcn2+/...
(A) Gcn2+/+ and Gcn2–/– murine leukemic lines were cultured in RPMI media and cell numbers were recorded over a 3-day period. (B and C) Gcn2+/+ and Gcn2–/– T-ALL cells from panel A were treated with pegylated L-asparaginase (PEG) (0.01 IU/mL) or untreated (UT) over a 3-day period. Population doublings and cell viability were measured on day 3. Statistical significance was determined using 2-way ANOVA. ****P < 0.0001. (D) Gcn2+/+ and Gcn2–/– T-ALL mouse cell lines were treated with PEG for 16 hours to collect cell lysates. Western blot was used to detect GCN2, ASNS, and ATF4 proteins. (E) RNA was isolated from representative Gcn2+/+ and Gcn2–/– mouse T-ALL cells treated with or without PEG for 16 hours. qPCR was used to measure Asns mRNA levels. (F) Schematic illustration of secondary T-ALL model. Seven-week-old preleukemic bone marrow cells from KrasG12D;Gcn2+/+ and KrasG12D;Gcn2–/– mice were transplanted into lethally irradiated WT recipients. Mice received 2 doses of PEG at 53 and 60 days after transplantation (arrows). Mice were euthanized on day 74 after transplantation. (G and H) Lymphocyte percentages in peripheral blood and thymus weights from F were recorded at the experimental endpoint (n = 3 per group). Statistical significance was determined using 2-way ANOVA (G) and multiple unpaired t test (H). *P < 0.05; ****P < 0.0001. (I) Images of representative thymus from mice in F. (J) Representative image of H&E-stained mouse spleen from F. (K) Representative IHC staining for ASNS in thymus tissues from mice in I.

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