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RhCMV expands CCR5+ memory T cells and promotes SIV reservoir seeding in the gut mucosa
Chrysostomos Perdios, Naveen Suresh Babu, Celeste D. Coleman, Anna T. Brown, Shevon N. Alexander, Matilda J. Moström, Carolina Allers, Lara Doyle-Meyers, Christine M. Fennessey, Lori A. Rowe, Brandon F. Keele, Amitinder Kaur, Michael L. Freeman, Joseph C. Mudd
Chrysostomos Perdios, Naveen Suresh Babu, Celeste D. Coleman, Anna T. Brown, Shevon N. Alexander, Matilda J. Moström, Carolina Allers, Lara Doyle-Meyers, Christine M. Fennessey, Lori A. Rowe, Brandon F. Keele, Amitinder Kaur, Michael L. Freeman, Joseph C. Mudd
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Research Article AIDS/HIV Immunology

RhCMV expands CCR5+ memory T cells and promotes SIV reservoir seeding in the gut mucosa

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Abstract

Cytomegalovirus (CMV) is a prevalent β-herpesvirus that persists asymptomatically in immunocompetent hosts. In people with HIV-1 (PWH), CMV is associated with HIV-1 persistence and particular inflammatory-related comorbidities. The true causative role of CMV in HIV-associated pathologies, however, remains unclear given that nearly all PWH are coinfected with CMV. In this study, we examined acute phase immune and virological dynamics in cohorts of SIV-infected rhesus macaques (RMs) that were naturally seropositive or -negative for rhesus CMV (RhCMV). We observed prior to SIV, RhCMV expanded a polyclonal population of target CCR5+CD4+ T cells in gut and lymph nodes that expressed the chemotactic receptor CXCR3 and were largely not specific for RhCMV. Upon SIV infection, RhCMV+ RMs exhibited higher peak viremia and elevated levels of SIV DNA in the upper and lower intestine. Greater seeding of SIV DNA was associated with a maintenance of CCR5-expressing CD4+ T cells that were enriched within the RhCMV+ gut along a CXCR3/CXCL9 chemotactic axis. Overall, the data suggest that RhCMV can promote SIV susceptibility within a diverse, polyclonal pool of CD4+ T cells that are not entirely RhCMV specific.

Authors

Chrysostomos Perdios, Naveen Suresh Babu, Celeste D. Coleman, Anna T. Brown, Shevon N. Alexander, Matilda J. Moström, Carolina Allers, Lara Doyle-Meyers, Christine M. Fennessey, Lori A. Rowe, Brandon F. Keele, Amitinder Kaur, Michael L. Freeman, Joseph C. Mudd

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Figure 2

CD4+CCR5+ T cells exhibit high clonal diversity and limited overlap with CD4+ CMV-specific T cells pre-SIV.

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CD4+CCR5+ T cells exhibit high clonal diversity and limited overlap with...
(A) Activation-induced marker assay gating strategy and %CCR5+CD4+ memory T cells RhCMV specificity box plot based on CD40L and CD69 expression (n = 7). The gate in the CD95/CD28 biplot was drawn to exclude CD95–CD28+ naive CD4+ T cells. (B) Circos plots where each segment around the circle represents a unique T cell receptor-β (TCRB) complementarity-determining region 3 amino acid (CDR3aa) sequence identified between CD4+CCR5+ and CD4+CMV-specific (CD4+CMV+) groups. Ribbons connecting segments indicate shared CDR3aa sequences, illustrating the extent of clonal overlap between the 2 groups. The most expanded clones appear in bright orange or purple, while progressively smaller clones are shaded darker, culminating in black for the least abundant clonotypes (n = 5). (C) Heatmap displaying the Jaccard index of CDR3aa overlap between CD4+CCR5+ and CD4+CMV+ per animal (n = 5). (D) Shannon entropy based on natural logarithm (nat) box plots for each paired sample (n = 5). (E) Pielou’s evenness index box plots for each paired sample (n = 5). (F) Gini coefficient box plots for each paired sample (n = 5). For A and D–F error bars represent 1.5 times the interquartile range. For A statistical comparisons performed using 2-sided Wilcoxon matched pairs signed-rank test. For D–F statistical comparisons performed using 2-sided paired t test. PBMC, peripheral blood mononuclear cells; * P < 0.05; ** P < 0.01; *** P < 0.001.

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