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Methylation-induced suppression of YAP/TAZ confers sensitivity to HDAC inhibitors in high-grade IDH mutant gliomas
Thomas K. Sears, Matthew McCord, Wenxia Wang, Alicia Steffens, Kathleen McCortney, Rahul Chaliparambil, Jann N. Sarkaria, Craig M. Horbinski
Thomas K. Sears, Matthew McCord, Wenxia Wang, Alicia Steffens, Kathleen McCortney, Rahul Chaliparambil, Jann N. Sarkaria, Craig M. Horbinski
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Research Article Cell biology Oncology

Methylation-induced suppression of YAP/TAZ confers sensitivity to HDAC inhibitors in high-grade IDH mutant gliomas

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Abstract

IDH1/2 mutations (IDHmut) increase methylation of DNA and histones in gliomas. IDHmut inhibitors are effective against low-grade IDHmut gliomas, but new strategies against high-grade IDHmut gliomas are needed. Although histone deacetylase inhibitors (HDACi) are ineffective against IDHwt glioblastoma (GBM), their potential in IDHmut gliomas has not been extensively studied. We previously established that IDHmut gliomas are more sensitive to HDACi than IDHwt GBM. Here we show that IDHmut is associated with greater sensitivity to HDACi only in glioma, not in IDHmut chondrosarcoma or cholangiocarcinoma. While HDACi induced more histone acetylation and gene regulation in IDHmut glioma than in IDHwt GBM, such acetylation was mostly within gene deserts, whereas IDHmut glioma promoters paradoxically lost histone acetylation. Two mediators of HDACi resistance, YAP and TAZ, were methylated and suppressed in IDHmut gliomas but not in other IDHmut cancers. Inducing YAP or TAZ expression in IDHmut gliomas conferred resistance to HDACi. Finally, belinostat extended in vivo survival only in IDHmut glioma models, not in IDHmut GBM models. Our findings provide a mechanistic rationale for further studies of HDACi in patients with IDHmut glioma, as well as the potential use of YAP/TAZ as a biomarker of HDACi sensitivity in cancers.

Authors

Thomas K. Sears, Matthew McCord, Wenxia Wang, Alicia Steffens, Kathleen McCortney, Rahul Chaliparambil, Jann N. Sarkaria, Craig M. Horbinski

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Figure 4

WWTR1 gene expression and TAZ protein levels are associated with HDACi sensitivity.

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WWTR1 gene expression and TAZ protein levels are associated with HDACi s...
(A) DepMap analysis integrating panobinostat response in cell cultures to transcriptomic gene expression data identified numerous genes associated with panobinostat resistance and sensitivity. (B) Western blot of IDHwt and IDHmut glioma cultures showing TAZ, YAP, and p-YAP (S127) protein levels. (C) Scatterplot evaluating correlation between WWTR1 and YAP1 gene expression and panobinostat IC50 based on IDH status. Robust linear regression with 2-tailed Spearman’s correlation analysis. Each data point represents the mean of 3 biological replicates. (D) WWTR1 and YAP1 gene expression (from RNA-Seq) and panobinostat IC50 for individual cell cultures with IDH status annotation. Data are shown as mean ± SEM (n = 3 biological replicates). (E) Scatterplot evaluating correlation between TAZ and YAP protein levels and panobinostat IC50 based on IDH status. Robust linear regression with 2-tailed Spearman’s correlation analysis. Each data point represents the mean of 3 biological replicates. (F) TAZ and YAP protein levels (from Western blot in B) and panobinostat IC50 for individual cell cultures with IDH status annotation. Data are shown as mean ± SEM (n = 3 biological replicates).

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