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Conserved interactions with stromal and immune cells coordinate de novo B cell lymphopoiesis in fetal intestines
Kimberly A. Carroll, Weihong Gu, Long Phan, Eduardo Gonzalez Santiago, Wenjia Wang, George C. Tseng, Liza Konnikova, Shruti Sharma
Kimberly A. Carroll, Weihong Gu, Long Phan, Eduardo Gonzalez Santiago, Wenjia Wang, George C. Tseng, Liza Konnikova, Shruti Sharma
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Research Article Development Immunology

Conserved interactions with stromal and immune cells coordinate de novo B cell lymphopoiesis in fetal intestines

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Abstract

Recent findings suggest that the small intestine (SI) is a potentially novel site for B cell lymphopoiesis during fetal and neonatal life. However, the unique and/or conserved features that enable B cell development at this site remain unclear. To investigate the molecular and cellular scaffolds for B cell lymphopoiesis in mouse and human fetal intestines, we leveraged single-cell RNA-Seq, in situ immunofluorescence, spatial transcriptomics, and high-dimensional spectral flow cytometry. We found that SI mesenchymal and stromal cells expressed higher levels of chemokines known to recruit common lymphoid progenitors. Importantly, local lymphatic endothelial cells expressed IL-7 and TSLP in proximity to IL-7R+ precursor B cells, likely promoting their differentiation in the SI. Notably, we found that fetal-derived lymphoid tissue inducer (LTi) cells were required for B cell development and localization in the SI, but not fetal liver. These findings identify a lymphoid tissue development–independent role for this immune cell in B cell development. Collectively, our data reveal a conserved intestinal B cell niche in mice and humans, challenging traditional models of lymphopoiesis. The identification of a requisite cellular/molecular scaffold for fetal B cell development allows future studies to test the importance of this de novo B cell lymphopoiesis to long-term immunity.

Authors

Kimberly A. Carroll, Weihong Gu, Long Phan, Eduardo Gonzalez Santiago, Wenjia Wang, George C. Tseng, Liza Konnikova, Shruti Sharma

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Figure 4

LTi cells in mouse intestines reside proximal to B cells with predicted interactions influencing B cell niche establishment at fetal time points.

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LTi cells in mouse intestines reside proximal to B cells with predicted ...
(A) A heatmap depicting the relative expression of queried receptor-ligand pairs from subset immune cell populations from mouse scRNA-Seq (Figure 3A and Supplemental Figure 4) (B) Chord diagram depicting the predicted lymphotoxin (LT) signaling interactions between sender (LTi cell) and receiver populations of LT family ligand and receptors from MCDA dataset with colors corresponding to the sender population (arrow direction corresponds to target populations, and flat ends correspond to sender population) and pointing to the receivers (outer ring color). (C) Chord diagram from CellChat of all ligand and receptor interactions from LTi cells to other intestinal cell populations (denoted by outer ring color). Arrowhead direction corresponds to predicted receiver. (D and E) IL-7R or LTBR expression in intestinal and fetal liver B cells (CD19+B220+ live cells) depicted in histogram and quantified MFI across B cell subsets (Figure 2C) (n = 3, 1-way ANOVA, **P < 0.01, ****P < 0.0001; data are shown as mean ± SEM). (F) Representative image from fetal mouse intestinal tissue (E18.5) mice stained with RNA probes Cd19 (white) to mark B cells and Rorc (green) to mark LTi cells, counterstained with DAPI (blue). Yellow box outlines selected ROI depicted to the right. Scale bar: 50 µM. Red arrows denote LTi and B cell interactions. (G) Quantification of B cell and LTi proximity analyzed by determining the percentage of Cd19+ cells within 20 μM of Rorc+ cells divided by total Cd19+ cells. (H) Representative human intestinal tissue section (21 weeks gestational age) stained with RNA probes CD19 (white) and RORC (green), counterstained with DAPI (blue) and a zoomed section outlined in yellow box, depicting LTi and B cell interactions in intestinal tissue. Scale bar: 90 µM. (I) Quantification of B cell and LTi proximity analyzed by determining the percentage of CD19+ cells within 20 μM of RORC+ cells divided by total CD19+ cells.

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