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The septin cytoskeleton is a regulator of intestinal epithelial barrier integrity and mucosal inflammation
Nayden G. Naydenov, … , Andrei I. Ivanov, Seham Ebrahim
Nayden G. Naydenov, … , Andrei I. Ivanov, Seham Ebrahim
Published October 7, 2025
Citation Information: JCI Insight. 2025;10(22):e191538. https://doi.org/10.1172/jci.insight.191538.
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Research Article Cell biology Gastroenterology

The septin cytoskeleton is a regulator of intestinal epithelial barrier integrity and mucosal inflammation

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Abstract

Intestinal epithelial barrier integrity is essential for human health, and its disruption induces and exacerbates intestinal inflammatory disorders. While the epithelial cytoskeleton is critical for maintaining gut barrier-integrity, the role of septins — a family of GTP-binding, cytoskeletal proteins — is largely unknown. This highlights an important knowledge gap, as dysfunction of septins, and specifically septin 9 (SEPT9), is associated with intestinal pathologies. We determined that SEPT9 localizes to the apical junctions of intestinal epithelial cells (IECs), overlapping with both tight and adherens junctions. IEC-specific ablation of SEPT9 in mice resulted in leaky gut, due to mislocalization of junctional proteins, and increased susceptibility to experimental colitis. Consistently, SEPT9 expression was significantly reduced in intestinal mucosa of patients with inflammatory bowel disease (IBD). Using affinity-purification mass spectrometry, super-resolution imaging, and genetic KO, we determined that SEPT9 interacts with and is necessary to recruit nonmuscle myosin IIC (NMIIC) to the IEC perijunctional actomyosin belt. Loss of NMIIC also caused IEC barrier disruption. In summary, SEPT9 regulates intestinal barrier integrity by supporting the assembly of tight and adherens junctions through NMIIC recruitment to the actomyosin belt. The septin cytoskeleton safeguards the intestinal mucosa during acute inflammation, and its disruption in IBD suggests a loss of this protective function.

Authors

Nayden G. Naydenov, Gaizun Hu, Dominik Robak, Atif Zafar, Khosiyat Makhmudova, Susana Lechuga, Yuta Ohno, Naseer Sangwan, Saikat Bandyopadhyay, Ryan Musich, Erin Jeffery, Lei Sun, Armando Marino-Melendez, Florian Rieder, Gloria Sheynkman, Andrei I. Ivanov, Seham Ebrahim

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Figure 1

SEPT9 is enriched at epithelial cell-cell junctions in the intestine and overlaps with tight and adherens junctions.

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SEPT9 is enriched at epithelial cell-cell junctions in the intestine and...
(A) UMAP plots showing only SEPT9-expressing cells (raw count > 0) from single-cell RNA-Seq of nondiseased human ascending colon and terminal ileum paired biopsies. Clusters corresponding to different populations of epithelial and nonepithelial cells are indicated and color coded. (B) Dot plot of SEPT9 transcript expression across annotated epithelial cell subtypes in human colon and ileum. Dot size reflects percentage of cells expressing SEPT9; color indicates average expression level. SEPT9 expression is enriched in several cell clusters (especially in EC and TA cells). (C) Confocal image of mouse small intestinal epithelium labeled for endogenous SEPT9 (magenta), F-actin (green), and merged image, showing junctional colocalization. Scale bar: 20 μm. (D and E) En face images of SEPT9 immunolabeling in ileal (D) and colonic (E) intestinal epithelium show continuous, junctional localization in differentiated epithelial cells. Scale bars: 50 μm (upper panels) and 10 μm (lower panels). (F) High-resolution confocal Z-stack images of ileal epithelial junctions showing localization of SEPT9 (cyan), ZO-1 (yellow), and β-catenin (magenta) in apical and basal optical sections. SEPT9 is enriched between tight (ZO-1) and adherens (β-catenin) junctions. Scale bars: 5 μm. (G) Quantification of fluorescence intensity profiles across the apical/basal axis shows that SEPT9 peaks between ZO-1 and β-catenin signals (n = 10 junctions from 3 mice). (H) Orthogonal (x–z) view of confocal stack at a position equivalent to dotted red box in (I), showing SEPT9-NG (cyan) localization relative to ZO-1 (yellow) and β-catenin (magenta). (I) Schematic model summarizing SEPT9 localization at epithelial junctions, associating with tight and adherens junctions and the cortical actin cytoskeleton.

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