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The MUC5B promoter variant results in proteomic changes in the nonfibrotic lung
Jeremy A. Herrera, Mark Maslanka, Rachel Z. Blumhagen, Rachel Blomberg, Nyan Ye Lwin, Janna Brancato, Carlyne D. Cool, Jonathan P. Huber, Jonathan S. Kurche, Chelsea M. Magin, Kirk C. Hansen, Ivana V. Yang, David A. Schwartz
Jeremy A. Herrera, Mark Maslanka, Rachel Z. Blumhagen, Rachel Blomberg, Nyan Ye Lwin, Janna Brancato, Carlyne D. Cool, Jonathan P. Huber, Jonathan S. Kurche, Chelsea M. Magin, Kirk C. Hansen, Ivana V. Yang, David A. Schwartz
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Research Article Genetics Pulmonology

The MUC5B promoter variant results in proteomic changes in the nonfibrotic lung

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Abstract

The gain-of-function MUC5B promoter variant is the dominant risk factor for the development of idiopathic pulmonary fibrosis (IPF). However, its impact on protein expression in both nonfibrotic control and IPF lung specimens has not been well characterized. Utilizing laser capture microdissection coupled to mass spectrometry, we investigated the proteomic profiles of airway and alveolar epithelium in nonfibrotic controls (n = 12) and IPF specimens (n = 12), stratified by the MUC5B promoter variant. Through qualitative and quantitative analyses, as well as pathway analysis and immunohistological validation, we have identified a distinct MUC5B-associated protein profile. Notably, the nonfibrotic control alveoli exhibited substantial MUC5B-associated protein changes, with an increase in IL-3 signaling. Additionally, we found that epithelial cells overlying IPF fibroblastic foci clustered closely to alveolar epithelia and expressed proteins associated with cellular stress pathways. In conclusion, our findings suggest that the MUC5B promoter variant leads to protein changes in alveolar and airway epithelium that appear to be associated with initiation and progression of lung fibrosis.

Authors

Jeremy A. Herrera, Mark Maslanka, Rachel Z. Blumhagen, Rachel Blomberg, Nyan Ye Lwin, Janna Brancato, Carlyne D. Cool, Jonathan P. Huber, Jonathan S. Kurche, Chelsea M. Magin, Kirk C. Hansen, Ivana V. Yang, David A. Schwartz

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Figure 7

IPF epithelia overlying the fibroblastic foci (FF) are defined by cell stress pathways.

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IPF epithelia overlying the fibroblastic foci (FF) are defined by cell s...
(A) Venn diagram of detected proteins in the IPF epithelia overlying FF as compared with IPF and nonfibrotic control alveoli. (B, C, and E) Volcano plots comparing (B) IPF epithelia overlying the FF and IPF alveoli, (C) the subset of proteins associated with “eIF2 signaling,” and (E) the subset of significantly changed proteins in B reassessed for the MUC5B promoter variant, showing the negative natural log of adjusted P values plotted against the log2(fold change) for each protein. (D) A heatmap displaying z scores of the significantly changed “eIF2 signaling” proteins comparing IPF epithelia overlying FF, IPF alveoli, and nonfibrotic control alveoli. n = 12 per group (6 WT and 6 MUC5B promoter variant).

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