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Early multiple sclerosis activity associated with TBX21+CD21loCXCR3+ B cell expansion resembling EBV-induced phenotypes
Elliott D. SoRelle, Ellora Haukenfrers, Gillian Q. Horn, Vaibhav Jain, James Giarraputo, Karen Abramson, Emily Hocke, Laura A. Cooney, Kristina M. Harris, Scott S. Zamvil, Simon G. Gregory, Micah A. Luftig
Elliott D. SoRelle, Ellora Haukenfrers, Gillian Q. Horn, Vaibhav Jain, James Giarraputo, Karen Abramson, Emily Hocke, Laura A. Cooney, Kristina M. Harris, Scott S. Zamvil, Simon G. Gregory, Micah A. Luftig
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Research Article Immunology Virology

Early multiple sclerosis activity associated with TBX21+CD21loCXCR3+ B cell expansion resembling EBV-induced phenotypes

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Abstract

Epstein-Barr virus (EBV) infection precedes multiple sclerosis (MS) onset and plays a poorly understood etiologic role. To investigate possible viral pathogenesis, we analyzed single-cell expression in peripheral B cells from people with early MS collected longitudinally during the Immune Tolerance Network STAyCIS Trial. Expression profiles were compared with single-cell RNA-Seq (scRNA-Seq) from in vitro EBV models, autoimmune disorders, chronic infectious diseases, and healthy controls. Analyses focused on CD19+CD20+CD21loCD11c+T-bet+ atypical B cells (ABCs). ABCs were significantly enriched in early MS PBMCs versus healthy controls by scRNA-Seq and flow cytometry, establishing ABC expansion as a clinical feature. EBV-associated ABC expression, including CXCR3, programmed cell death ligand 1 (PD-L1), and PD-L2, was enriched in early MS; however, direct EBV infection of ABCs was not detected. Early MS ABCs exhibited significantly upregulated inflammatory cytokine mRNAs (CXCL8, IL18, VEGFA). Further, de novo EBV-infected B cells secreted IL-8 and VEGF. MS activity stratification revealed rare, distinctive inflammatory ABCs significantly underrepresented in individuals with no evidence of activity long-term versus people with additional relapsing-remitting MS activity at the primary endpoint. Moreover, CXCR3+ ABCs increased after baseline diagnosis and were significantly enriched in people with disease exacerbation during the study. Thus, ABC expansion and inflammatory responses correlate to early MS activity, possibly as a bystander response to EBV.

Authors

Elliott D. SoRelle, Ellora Haukenfrers, Gillian Q. Horn, Vaibhav Jain, James Giarraputo, Karen Abramson, Emily Hocke, Laura A. Cooney, Kristina M. Harris, Scott S. Zamvil, Simon G. Gregory, Micah A. Luftig

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Figure 2

EBV-associated gene expression signatures by B subset, disease, and clinical outcome.

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EBV-associated gene expression signatures by B subset, disease, and clin...
(A) Strategy to assess single-cell gene expression signatures associated with de novo EBV infection of B cells in vitro. ABC, EBV+ atypical B cell; NFκB, EBV+ NF-κB activated B cell phenotype; PB, EBV+ plasmablast phenotype. (B) UMAP representation of the in vitro EBV+ ABC gene signature across all integrated B cells from disease and healthy control datasets. DEGs, differentially expressed genes. (C) EBV+ ABC signature module scores by B cell state. Scores were calculated from the top 100 DEGs in EBV+ ABCs versus resting ABCs in vitro. (D) EBV+ ABC signature module scores in the ABC 1 cluster stratified by disease and healthy control datasets. (E) Dot plots of EBV+ ABC biomarker expression across ABC 1 (top panel) and ABC 2 (bottom panel) subsets in disease cohorts and healthy adults. (F) EBV+ ABC biomarker expression by dataset. Single-cell expression heatmap of ABC biomarkers and EBV-induced genes in ABCs during in vitro early infection. Genes (rows) are clustered by expression pattern similarity across datasets. Resting (EBV–) and infected (EBV+) ABCs from in vitro experiments are outlined in black and green boxes, respectively. EBV+ ABC gene groups identified by unbiased hierarchical ordering to have elevated expression in ABCs from patients with eMS but not healthy adults are outlined in cyan.

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