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Involvement of lncRNA MIR205HG in idiopathic pulmonary fibrosis and IL-33 regulation via Alu elements
Tsuyoshi Takashima, Chao Zeng, Eitaro Murakami, Naoko Fujiwara, Masaharu Kohara, Hideki Nagata, Zhaozu Feng, Ayako Sugai, Yasue Harada, Rika Ichijo, Daisuke Okuzaki, Satoshi Nojima, Takahiro Matsui, Yasushi Shintani, Gota Kawai, Michiaki Hamada, Tetsuro Hirose, Kazuhiko Nakatani, Eiichi Morii
Tsuyoshi Takashima, Chao Zeng, Eitaro Murakami, Naoko Fujiwara, Masaharu Kohara, Hideki Nagata, Zhaozu Feng, Ayako Sugai, Yasue Harada, Rika Ichijo, Daisuke Okuzaki, Satoshi Nojima, Takahiro Matsui, Yasushi Shintani, Gota Kawai, Michiaki Hamada, Tetsuro Hirose, Kazuhiko Nakatani, Eiichi Morii
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Research Article Inflammation Pulmonology

Involvement of lncRNA MIR205HG in idiopathic pulmonary fibrosis and IL-33 regulation via Alu elements

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Abstract

Idiopathic pulmonary fibrosis (IPF) causes remodeling of the distal lung. Pulmonary remodeling is histologically characterized by fibrosis, as well as appearance of basal cells; however, the involvement of basal cells in IPF remains unclear. Here, we focus on the long noncoding RNA MIR205HG, which is highly expressed in basal cells, using RNA sequencing. Through RNA sequencing of genetic manipulations using primary cells and organoids, we discovered that MIR205HG regulates IL-33 expression. Mechanistically, the AluJb element of MIR205HG plays a key role in IL-33 expression. Additionally, we identified a small molecule that targets the AluJb element, leading to decreased IL-33 expression. IL-33 is known to induce type 2 innate lymphoid cells (ILC2s), and we observed that MIR205HG expression was positively correlated with the number of ILC2s in patients with IPF. Collectively, these findings provide insights into the mechanisms by which basal cells contribute to IPF and suggest potential therapeutic targets.

Authors

Tsuyoshi Takashima, Chao Zeng, Eitaro Murakami, Naoko Fujiwara, Masaharu Kohara, Hideki Nagata, Zhaozu Feng, Ayako Sugai, Yasue Harada, Rika Ichijo, Daisuke Okuzaki, Satoshi Nojima, Takahiro Matsui, Yasushi Shintani, Gota Kawai, Michiaki Hamada, Tetsuro Hirose, Kazuhiko Nakatani, Eiichi Morii

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Figure 10

AluJb element of MIR205HG regulates IL33 expression.

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AluJb element of MIR205HG regulates IL33 expression.
(A) Workflow of Ch...
(A) Workflow of ChIRP for binding of IL33 using the MIR205HG probe. (B) qRT-PCR of MIR205HG and IL33 in ChIRP for MIR205HG enrichment in NHBE cells and IPF patient–derived airway organoids. ChIRP was performed using MIR205HG probe and LacZ probe as control. Data represent mean ± SD. N.D., not detected. (C) Predicted binding sites of the AluJb element of MIR205HG and the Alu elements (intron) of IL33. A total of 9 sites with similarity to AluJb or Alu elements were found in the Alu element of IL33. Blue and red indicate sequence similarity between the AluJb element of MIR205HG and the sense/antisense strand of the Alu elements of IL33, respectively. (D) Vector design for functional analysis of the AluJb element of MIR205HG. (E) RT-PCR products obtained by transfection of NHBE cells with primers shown in D. Deletion of the AluJb element (ΔAluJb) of MIR205HG was confirmed. (F) qRT-PCR showing IL33 mRNA and IL33 pre-mRNA expression under E conditions. Data represent mean ± SD. **P < 0.01, ***P < 0.001; P values were determined by 1-way ANOVA with Holm-Šídák post hoc test. (G) Schematic illustration of the experimental results.

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ISSN 2379-3708

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