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Live-cell imaging of human liver fibrosis using hepatic micro-organoids
Yuan Guan, … , Annika Enejder, Gary Peltz
Yuan Guan, … , Annika Enejder, Gary Peltz
Published December 10, 2024
Citation Information: JCI Insight. 2025;10(2):e187099. https://doi.org/10.1172/jci.insight.187099.
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Research Article Hepatology

Live-cell imaging of human liver fibrosis using hepatic micro-organoids

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Abstract

Due to the limitations of available in vitro systems and animal models, we lack a detailed understanding of the pathogenetic mechanisms of and have minimal treatment options for liver fibrosis. Therefore, we engineered a live-cell imaging system that assessed fibrosis in a human multilineage hepatic organoid in a microwell (i.e., microHOs). Transcriptomic analysis revealed that TGFB converted mesenchymal cells in microHOs into myofibroblast-like cells resembling those in fibrotic human liver tissue. When pro-fibrotic intracellular signaling pathways were examined, the antifibrotic effect of receptor-specific tyrosine kinase inhibitors was limited to the fibrosis induced by the corresponding growth factor, which indicates their antifibrotic efficacy would be limited to fibrotic diseases solely mediated by that growth factor. Based upon transcriptomic and transcription factor activation analyses in microHOs, glycogen synthase kinase 3β and p38 MAPK inhibitors were identified as potential new broad-spectrum therapies for liver fibrosis. Other new therapies could subsequently be identified using the microHO system.

Authors

Yuan Guan, Zhuoqing Fang, Angelina Hu, Sarah Roberts, Meiyue Wang, Wenlong Ren, Patrik K. Johansson, Sarah C. Heilshorn, Annika Enejder, Gary Peltz

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Figure 4

PDGFB- and TGFB-induced cellular composition changes in mesenchymal and epithelial cell clusters in fibrotic microHOs.

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PDGFB- and TGFB-induced cellular composition changes in mesenchymal and ...
(A) Combined UMAP for scRNA-Seq from cells in day 21 control (NC), PDGFB-treated (P), or TGFB-treated (T) microHO cultures. (B) Cell percentages for each of the 11 clusters in the types of microHOs. (C) Percentage change of each indicated cell cluster in NC, PDGFB-treated, and TGFB-treated microHOs. (D) RNA velocity results plotted on a UMAP. Left: stream embedding; Middle: velocity length indicates differentiation rate; Right: confidence, determined by correlation of velocity determined for neighboring clusters in UMAP. Bottom: velocity summary for all clusters. (E) Cell cycle phase on the UMAP. Percentage of cells in each phase of the cell cycle for NC, PDGFB-treated, and TGFB-treated microHOs or for all 11 clusters. (F) CytoTRACE score plotted on the UMAP or as box plots for MyoF_T1, MyoF_P, and Cho3 cells in NC, PDGFB-treated, and TGFB-treated microHOs. (G) Among cell types in human liver, MyoF_T1 and MyoF_P transcriptomes are most similar to myofibroblasts, while Mes2 is most similar to HSCs. Results when Mes2, MyoF_T1, and MyoF_P gene signatures were compared with transcriptomes of the following cell types in normal and cirrhotic (90) human liver: vascular smooth muscle (VSMC), HSC, MyoF, and mesothelium. MyoF_T1 and MyoF_P module scores are most similar to MyoF; Mes2 has greatest similarity with HSCs. MyoF module scores for MyoF_T1 and MyoF_P are 3-fold higher (P < 1 × 10–10) than that of HSCs; HSC gene signature module score for Mes2 is 4.8-fold (P < 1 × 10–10) higher than for MyoF. (H) Normalized enrichment score (NES) of GSEA examining the association of MyoF_T1 and MyoF_P gene signatures with liver tissue from nonfibrotic or fibrotic NASH liver and with resected HCC tissue (nonfibrotic or fibrotic). The MyoF_T signature was strongly associated with fibrotic NASH liver; both signatures were strongly associated with fibrotic HCC but not with nonfibrotic NASH or HCC tissue. (I) Cell type interactions (CellChat). Axes in left and middle represent total outgoing or incoming information associated with each cell type from all CellChat signaling pathways or only the “COLLAGEN pathway.” Right: Hypothesis generated by CellChat analysis. The highest level of intercellular communication occurs between MyoF_T1 and cholangiocytes. *P < 0.05; **P < 0.01.

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