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ASCL1 regulates and cooperates with FOXA2 to drive terminal neuroendocrine phenotype in prostate cancer
Shaghayegh Nouruzi, Takeshi Namekawa, Nakisa Tabrizian, Maxim Kobelev, Olena Sivak, Joshua M Scurll, Cassandra Jingjing Cui, Dwaipayan Ganguli, Amina Zoubeidi
Shaghayegh Nouruzi, Takeshi Namekawa, Nakisa Tabrizian, Maxim Kobelev, Olena Sivak, Joshua M Scurll, Cassandra Jingjing Cui, Dwaipayan Ganguli, Amina Zoubeidi
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Research Article Cell biology

ASCL1 regulates and cooperates with FOXA2 to drive terminal neuroendocrine phenotype in prostate cancer

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Abstract

Lineage plasticity mediates resistance to androgen receptor pathway inhibitors (ARPIs) and progression from adenocarcinoma to neuroendocrine prostate cancer (NEPC), a highly aggressive and poorly understood subtype. Neuronal transcription factor ASCL1 has emerged as a central regulator of the lineage plasticity driving neuroendocrine differentiation. Here, we showed that ASCL1 was reprogrammed in ARPI-induced transition to terminal NEPC and identified that the ASCL1 binding pattern tailored the expression of lineage-determinant transcription factor combinations that underlie discrete terminal NEPC identity. Notably, we identified FOXA2 as a major cofactor of ASCL1 in terminal NEPC, which is highly expressed in ASCL1-driven NEPC. Mechanistically, FOXA2 and ASCL1 interacted and worked in concert to orchestrate terminal neuronal differentiation. We identified that prospero homeobox 1 was a target of ASCL1 and FOXA2. Targeting prospero homeobox 1 abrogated neuroendocrine characteristics and led to a decrease in cell proliferation in vitro and tumor growth in vivo. Our findings provide insights into the molecular conduit underlying the interplay between different lineage-determinant transcription factors to support the neuroendocrine identity and nominate prospero homeobox 1 as a potential target in ASCL1-high NEPC.

Authors

Shaghayegh Nouruzi, Takeshi Namekawa, Nakisa Tabrizian, Maxim Kobelev, Olena Sivak, Joshua M Scurll, Cassandra Jingjing Cui, Dwaipayan Ganguli, Amina Zoubeidi

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Figure 3

FOXA2 cooperates with ASCL1 in NEPC.

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FOXA2 cooperates with ASCL1 in NEPC.
(A) Heatmap of FOXA2 and ASCL1 ChIP...
(A) Heatmap of FOXA2 and ASCL1 ChIP-Seq binding intensity in NCI-H660; represents the regions co-occupied by FOXA2 alone or FOXA2 and ASCL1. (B) Proximity ligation assay (PLA) showing ASCL1 and FOXA2 interactions, visualized as red fluorescent dots, indicating molecular proximity (<40 nm), in NCI-H660. Nuclei are counterstained with DAPI (blue). Original magnification, ×20. (C) ASCL1 and FOXA2 interaction was measured by co-immunoprecipitation in NCI-H660. (D) Pathways regulated by ASCL1:FOXA2, shown as –log10 P value using gProfiler. (E) Box plot shows the expression of ASCL1:FOXA2 cobound genes in Adeno, ASCL1-low, and ASCL1-high NEPC patient datasets (3, 9). The middle solid line shows the median. Statistical significance was assessed using 2-tailed unpaired t test, followed by the Bonferroni method (ASCL1-high vs. PRAD P < 2 × 10–16). (F) Box plot shows expression of ASCL1:FOXA2 cobound genes in LuCaP PRAD and NEPC PDXs. The middle solid line shows the median. Statistical significance was assessed using a 2-tailed unpaired t test. (G) Box plot shows expression of ASCL1:FOXA2 cobound genes in 16DCRPC, 42DENZR, 42FENZR, and NCI-H660. The middle solid line shows the median. Statistical significance was assessed using a 2-tailed unpaired t test, followed by the Bonferroni method. (H) Box plot shows the expression of ASCL1:FOXA2 cobound genes in NCI-H660 following KD of ASCL1 (left) or FOXA2 (right). The middle solid line shows the median. Statistical significance was assessed using a 2-tailed unpaired t test. (I) Heatmap of FOXA2, ASCL1, H3K27ac ChIP-Seq, and chromatin accessibility (ATAC-Seq) shows binding and accessibility at ASCL1:FOXA2 cobound regions in NCI-H660. (J) Heatmap shows ASCL1 and H3K27ac binding intensity and chromatin accessibility in 42DENZR at ASCL1:FOXA2 cobound regions in NCI-H660. (K) IGV tracks represent ASCL1:FOXA2 target genes bound by ASCL1 and FOXA2 exclusively in NCI-H660 within the accessible region with H3K27ac mark.

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