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ASCL1 regulates and cooperates with FOXA2 to drive terminal neuroendocrine phenotype in prostate cancer
Shaghayegh Nouruzi, Takeshi Namekawa, Nakisa Tabrizian, Maxim Kobelev, Olena Sivak, Joshua M Scurll, Cassandra Jingjing Cui, Dwaipayan Ganguli, Amina Zoubeidi
Shaghayegh Nouruzi, Takeshi Namekawa, Nakisa Tabrizian, Maxim Kobelev, Olena Sivak, Joshua M Scurll, Cassandra Jingjing Cui, Dwaipayan Ganguli, Amina Zoubeidi
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Research Article Cell biology

ASCL1 regulates and cooperates with FOXA2 to drive terminal neuroendocrine phenotype in prostate cancer

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Abstract

Lineage plasticity mediates resistance to androgen receptor pathway inhibitors (ARPIs) and progression from adenocarcinoma to neuroendocrine prostate cancer (NEPC), a highly aggressive and poorly understood subtype. Neuronal transcription factor ASCL1 has emerged as a central regulator of the lineage plasticity driving neuroendocrine differentiation. Here, we showed that ASCL1 was reprogrammed in ARPI-induced transition to terminal NEPC and identified that the ASCL1 binding pattern tailored the expression of lineage-determinant transcription factor combinations that underlie discrete terminal NEPC identity. Notably, we identified FOXA2 as a major cofactor of ASCL1 in terminal NEPC, which is highly expressed in ASCL1-driven NEPC. Mechanistically, FOXA2 and ASCL1 interacted and worked in concert to orchestrate terminal neuronal differentiation. We identified that prospero homeobox 1 was a target of ASCL1 and FOXA2. Targeting prospero homeobox 1 abrogated neuroendocrine characteristics and led to a decrease in cell proliferation in vitro and tumor growth in vivo. Our findings provide insights into the molecular conduit underlying the interplay between different lineage-determinant transcription factors to support the neuroendocrine identity and nominate prospero homeobox 1 as a potential target in ASCL1-high NEPC.

Authors

Shaghayegh Nouruzi, Takeshi Namekawa, Nakisa Tabrizian, Maxim Kobelev, Olena Sivak, Joshua M Scurll, Cassandra Jingjing Cui, Dwaipayan Ganguli, Amina Zoubeidi

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Figure 1

ASCL1 regulates FOXA2 in terminal NEPC.

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ASCL1 regulates FOXA2 in terminal NEPC.
(A) Heatmap of ASCL1 binding int...
(A) Heatmap of ASCL1 binding intensity in NEPC LuCaP PDXs (3) presented as fold-change over input, with each horizontal line representing a 3 kb locus. (B) Genomic annotation is shown as a percentage of all peaks. Introns and intergenic regions were called enhancers, and UTRs and transcription start sites (TSSs) were called others. (C) Pathways associated with ASCL1-bound promoters are shown as normalized enrichment scores with pathways P < 0.05; statistical analysis was calculated by gProfiler. (D) The heatmap shows the expression of ASCL1-bound promoters in LuCaP PDXs. Samples are clustered based on ASCL1 expression (n = 18). (E) Heatmap shows expression of ASCL1-bound promoters in 42DENZR, 42FENZR, and de novo NEPC cell line NCI-H660. (F) Visualization of genomic loci of FOXA2 using IGV showing relative occupancy of ASCL1 over input (left panel), the density of acetylation at H3K27 (H3K27ac) (middle panel), and H3K27 trimethylation (H3K27me3) (right panel) in 42DENZR, NCI-H660, and ASCL1-driven PDXs. (G) The correlation between FOXA2 and ASCL1 expression (log2 transcripts per million, log2TPM) in the patient datasets (3, 9), with each dot representing a patient tumor. Significance was evaluated by linear regression t test. (H) FOXA2 gene expression in PRAD, ASCL1-low NEPC, and ASCL1-high NEPC populations in the patient datasets (3, 9), with significance assessed using 2-tailed unpaired t test. Bonferroni’s correction was applied to adjust for multiple comparisons. Jittered points represent individual samples. (I) Relative mRNA expression of ASCL1 and FOXA2 in NCI-H660 following knockdown (KD) of ASCL1 using shRNA. Data are reported relative to nontransfected cells (CTL) (mean ± SD; n = 3). (J) Relative mRNA expression of ASCL1 and FOXA2 in 16DCRPC following doxycycline (Dox) induction of ASCL1. Data are reported relative to day 0 (mean ± SD, n = 2). OE, overexpression.

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