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Analysis of CNS autoimmunity in genetically diverse mice reveals unique phenotypes and mechanisms
Emily A. Nelson, Anna L. Tyler, Taylor Lakusta-Wong, Karolyn G. Lahue, Katherine C. Hankes, Cory Teuscher, Rachel M. Lynch, Martin T. Ferris, J. Matthew Mahoney, Dimitry N. Krementsov
Emily A. Nelson, Anna L. Tyler, Taylor Lakusta-Wong, Karolyn G. Lahue, Katherine C. Hankes, Cory Teuscher, Rachel M. Lynch, Martin T. Ferris, J. Matthew Mahoney, Dimitry N. Krementsov
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Research Article Genetics

Analysis of CNS autoimmunity in genetically diverse mice reveals unique phenotypes and mechanisms

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Abstract

Multiple sclerosis (MS) is a complex disease with significant heterogeneity in disease course and progression. Genetic studies have identified numerous loci associated with MS risk, but the genetic basis of disease progression remains elusive. To address this, we leveraged the Collaborative Cross (CC), a genetically diverse mouse strain panel, and experimental autoimmune encephalomyelitis (EAE). The 32 CC strains studied captured a wide spectrum of EAE severity, trajectory, and presentation, including severe-progressive, monophasic, relapsing remitting, and axial rotary–EAE (AR-EAE), accompanied by distinct immunopathology. Sex differences in EAE severity were observed in 6 strains. Quantitative trait locus analysis revealed distinct genetic linkage patterns for different EAE phenotypes, including EAE severity and incidence of AR-EAE. Machine learning–based approaches prioritized candidate genes for loci underlying EAE severity (Abcc4 and Gpc6) and AR-EAE (Yap1 and Dync2h1). This work expands the EAE phenotypic repertoire and identifies potentially novel loci controlling unique EAE phenotypes, supporting the hypothesis that heterogeneity in MS disease course is driven by genetic variation.

Authors

Emily A. Nelson, Anna L. Tyler, Taylor Lakusta-Wong, Karolyn G. Lahue, Katherine C. Hankes, Cory Teuscher, Rachel M. Lynch, Martin T. Ferris, J. Matthew Mahoney, Dimitry N. Krementsov

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Figure 1

MOG35–55 induced EAE in CC strains results in heterogeneous disease profiles.

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MOG35–55 induced EAE in CC strains results in heterogeneous disease prof...
EAE was induced via 200 μg MOG35–55 in CFA (s.c.) and 200 ng PTX (i.p.) in 8- to 14-week-old male and female B6 (18 male [M], 18 female [F]) and H2b or H2g7 CC mice (32 strains, ~5M, ~5F; Table 1). (A) Schematic illustrating the study design. (B) Percent EAE incidence per CC strain with B6 shown for reference control. Bar color denotes EAE subtype (classic,gay; AR, orange). (C) Percent incidence of RR (green), monophasic (light green), and chronic (gray) EAE in CC strains, with B6 shown for reference control. (D) Comparison of EAE disease severity in CC strains, as calculated by CDS, versus B6 reference controls. Significance of differences of each CC strain from B6 reference control was determined via 1-way ANOVA with Dunnett’s multiple-comparison test and indicated by asterisks where significant. Corresponding colors indicate directionality as compared with B6 (blue, less severe; red, more severe). (E–K) Distribution of strain CDS and incidence of EAE, classic-EAE, AR-EAE, chronic-EAE, RR-EAE, and monophasic-EAE, grouped by H2b and H2g7 homozygous haplotypes. Each data point in E–K represents a strain average. Significance of differences between haplotypes was determined by 2-tailed unpaired t test.

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