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Kidney mitochondrial DNA contributes to systemic IL-6 release in sepsis-associated acute kidney injury
Avnee J. Kumar, Katharine Epler, Jing Wang, Alice Shen, Negin Samandari, Mark L. Rolfsen, Laura A. Barnes, Gerald S. Shadel, Alexandra G. Moyzis, Alva G. Sainz, Karlen Ulubabyan, Kefeng Li, Kristen Jepsen, Xinrui Li, Mark M. Fuster, Roger G. Spragg, Roman Sasik, Volker Vallon, Helen Goodluck, Joachim H. Ix, Prabhleen Singh, Mark L. Hepokoski
Avnee J. Kumar, Katharine Epler, Jing Wang, Alice Shen, Negin Samandari, Mark L. Rolfsen, Laura A. Barnes, Gerald S. Shadel, Alexandra G. Moyzis, Alva G. Sainz, Karlen Ulubabyan, Kefeng Li, Kristen Jepsen, Xinrui Li, Mark M. Fuster, Roger G. Spragg, Roman Sasik, Volker Vallon, Helen Goodluck, Joachim H. Ix, Prabhleen Singh, Mark L. Hepokoski
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Research Article Inflammation Nephrology

Kidney mitochondrial DNA contributes to systemic IL-6 release in sepsis-associated acute kidney injury

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Abstract

Mitochondrial dysfunction is a major mechanism of acute kidney injury (AKI), and increased circulating interleukin 6 (IL-6) is associated with systemic inflammation and death due to sepsis. We tested whether kidney mitochondrial DNA (mtDNA) contributes to IL-6 release in sepsis-associated AKI via Toll-like receptor 9 (TLR9). In a murine model of sepsis via cecal ligation and puncture (CLP), we used next-generation sequencing of plasma mtDNA to inform the design of optimal target sequences for quantification by droplet digital PCR, and to identify single-nucleotide polymorphisms (SNPs) to infer tissue origin. We found significantly higher concentrations of plasma mtDNA after CLP versus shams and that plasma mtDNA SNPs matched kidney SNPs more than other organs. Kidney mtDNA contributed directly to IL-6 and mtDNA release from dendritic cells in vitro and kidney mitochondria solution led to higher IL-6 concentrations in vivo. IL-6 release was mitigated by a TLR9 inhibitor. Finally, plasma mtDNA was significantly higher in septic patients with AKI compared with those without AKI and correlated significantly with plasma IL-6. We conclude that AKI contributes to increased circulating IL-6 in sepsis via mtDNA release. Targeting kidney mitochondria and mtDNA release are potential translational avenues to decrease mortality from sepsis-associated AKI.

Authors

Avnee J. Kumar, Katharine Epler, Jing Wang, Alice Shen, Negin Samandari, Mark L. Rolfsen, Laura A. Barnes, Gerald S. Shadel, Alexandra G. Moyzis, Alva G. Sainz, Karlen Ulubabyan, Kefeng Li, Kristen Jepsen, Xinrui Li, Mark M. Fuster, Roger G. Spragg, Roman Sasik, Volker Vallon, Helen Goodluck, Joachim H. Ix, Prabhleen Singh, Mark L. Hepokoski

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Figure 2

Circulating cell-free DNA fragments are increased after cecal ligation and puncture compared with sham operation and circulating cell-free mtDNA is highly fragmented.

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Circulating cell-free DNA fragments are increased after cecal ligation a...
DNA was isolated from mouse plasma 4 hours after cecal ligation and puncture (CLP) versus sham operation. Next-generation sequencing was used to determine the size distribution of the circulating cell-free mtDNA fragments. Minimum Hamming distance for the entire mouse mitochondrial genome compared to the nuclear genome was determined by blastn in the ungapped mode. (A) The concentrations of total cell-free DNA fragments between 100 and 150 bp in length were determined by automated electrophoresis and found to be increased significantly in CLP mice versus shams. (B) Size distribution analysis of circulating cell-free mtDNA fragments showed a high degree of fragmentation after CLP, with roughly 40% of all fragments being less than 150 bp and roughly 15% being less than 100 bp in length. The overall size distribution of circulating cell-free mtDNA fragments did not differ significantly between CLP mice versus shams. (C) Several regions of the mouse mitochondrial genome, such as within the cytochrome c oxidase (COX) subunits, have very low minimum Hamming distances compared with the nuclear genome, indicating a high degree of similarity to a region of nuclear DNA. Significant differences between groups were determined by unpaired, 2-tailed t tests comparing the group means ± SEM. A, n = 4/group; B, n = 5/group. CDF, cumulative distribution function.

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