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A dual-acting DNASE1/DNASE1L3 biologic prevents autoimmunity and death in genetic and induced lupus models
Paul R. Stabach, Dominique Sims, Eduardo Gomez-Bañuelos, Sandra Zehentmeier, Kris Dammen-Brower, Andrew Bernhisel, Sophia Kujawski, Sam G. Lopez, Michelle Petri, Daniel W. Goldman, Ethan R. Lester, Quan Le, Tayyaba Ishaq, Hana Kim, Shivani Srivastava, Deepika Kumar, Joao P. Pereira, Kevin J. Yarema, Fotios Koumpouras, Felipe Andrade, Demetrios T. Braddock
Paul R. Stabach, Dominique Sims, Eduardo Gomez-Bañuelos, Sandra Zehentmeier, Kris Dammen-Brower, Andrew Bernhisel, Sophia Kujawski, Sam G. Lopez, Michelle Petri, Daniel W. Goldman, Ethan R. Lester, Quan Le, Tayyaba Ishaq, Hana Kim, Shivani Srivastava, Deepika Kumar, Joao P. Pereira, Kevin J. Yarema, Fotios Koumpouras, Felipe Andrade, Demetrios T. Braddock
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Research Article Therapeutics

A dual-acting DNASE1/DNASE1L3 biologic prevents autoimmunity and death in genetic and induced lupus models

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Abstract

A defining feature of systemic lupus erythematosus (SLE) is loss of tolerance to self-DNA, and deficiency of DNASE1L3, the main enzyme responsible for chromatin degradation in blood, is also associated with SLE. This association can be found in an ultrarare population of pediatric patients with DNASE1L3 deficiency who develop SLE, adult patients with loss-of-function variants of DNASE1L3 who are at a higher risk for SLE, and patients with sporadic SLE who have neutralizing autoantibodies against DNASE1L3. To mitigate the pathogenic effects of inherited and acquired DNASE1L3 deficiencies, we engineered a long-acting enzyme biologic with dual DNASE1/DNASE1L3 activity that is resistant to DNASE1 and DNASE1L3 inhibitors. Notably, we found that the biologic prevented the development of lupus in Dnase1–/–Dnase1L3–/– double-knockout mice and rescued animals from death in pristane-induced lupus. Finally, we confirmed that the human isoform of the enzyme biologic was not recognized by autoantibodies in SLE and efficiently degraded genomic and mitochondrial cell–free DNA, as well as microparticle DNA, in SLE plasma. Our findings suggest that autoimmune diseases characterized by aberrant DNA accumulation, such as SLE, can be effectively treated with a replacement DNASE tailored to bypass pathogenic mechanisms, both genetic and acquired, that restrict DNASE1L3 activity.

Authors

Paul R. Stabach, Dominique Sims, Eduardo Gomez-Bañuelos, Sandra Zehentmeier, Kris Dammen-Brower, Andrew Bernhisel, Sophia Kujawski, Sam G. Lopez, Michelle Petri, Daniel W. Goldman, Ethan R. Lester, Quan Le, Tayyaba Ishaq, Hana Kim, Shivani Srivastava, Deepika Kumar, Joao P. Pereira, Kevin J. Yarema, Fotios Koumpouras, Felipe Andrade, Demetrios T. Braddock

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Figure 7

Efficacy of LBme in diffuse alveolar hemorrhage in 2 strains of C57BL/6 mice.

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Efficacy of LBme in diffuse alveolar hemorrhage in 2 strains of C57BL/6 ...
(A) WT mice have higher amounts of plasma cfDNA 14 days after pristane injection than untreated negative control (N/C) mice when analyzed by qPCR. ****P < 0.0001, Student’s 2-tailed unpaired t test. (B) Ten days after pristane injection, before the dosing strategy began, both cohorts of mice show elevated levels of CXCL10 compared with N/C mice that did not receive pristane. **P < 0.01, ordinary 1-way ANOVA followed by Šidák’s multiple comparison test. (C) C57BL/6J mice (The Jackson Laboratory) were dosed i.p. with 500 μL pristane on day 0 and weekly with either PBS or LBme (1 mg/kg) following the first death of an animal after pristane challenge (on day 10). The survival rate of dosed and vehicle-treated animals was 95% and 70%, respectively (P = 0.029, Mantel-Cox). (D) The identical study as in C was performed in C57BL/6 mice (Taconic Biosciences), with dosing beginning on day 9 after pristane, yielding a survival rate of 70% and 35%, for dosed and vehicle-treated animals, respectively (P = 0.017, Mantel-Cox). (E) D-dimers measured in C57BL/6J mice at 14 days inversely correlated with weight gain in the vehicle- (slope = –6.35, r2 = 0.55, F = 33.01, P < 0.0001) and LBme-treated (slope = –7.54, r2 = 0.69, F = 63.84, P < 0.0001) cohorts. (F) C-reactive protein and calprotectin were equivalent in the treated and untreated cohorts, but surfactant-D levels were significantly higher in vehicle-treated C57BL/6 mice at 14 days after pristane challenge, demonstrating that although acute-phase reaction and NETosis was equivalent in treated and untreated cohorts, LBme reduced alveolar damage in the treated mice. *P < 0.05, Student’s 2-tailed unpaired t test.

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