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A dual-acting DNASE1/DNASE1L3 biologic prevents autoimmunity and death in genetic and induced lupus models
Paul R. Stabach, Dominique Sims, Eduardo Gomez-Bañuelos, Sandra Zehentmeier, Kris Dammen-Brower, Andrew Bernhisel, Sophia Kujawski, Sam G. Lopez, Michelle Petri, Daniel W. Goldman, Ethan R. Lester, Quan Le, Tayyaba Ishaq, Hana Kim, Shivani Srivastava, Deepika Kumar, Joao P. Pereira, Kevin J. Yarema, Fotios Koumpouras, Felipe Andrade, Demetrios T. Braddock
Paul R. Stabach, Dominique Sims, Eduardo Gomez-Bañuelos, Sandra Zehentmeier, Kris Dammen-Brower, Andrew Bernhisel, Sophia Kujawski, Sam G. Lopez, Michelle Petri, Daniel W. Goldman, Ethan R. Lester, Quan Le, Tayyaba Ishaq, Hana Kim, Shivani Srivastava, Deepika Kumar, Joao P. Pereira, Kevin J. Yarema, Fotios Koumpouras, Felipe Andrade, Demetrios T. Braddock
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Research Article Therapeutics

A dual-acting DNASE1/DNASE1L3 biologic prevents autoimmunity and death in genetic and induced lupus models

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Abstract

A defining feature of systemic lupus erythematosus (SLE) is loss of tolerance to self-DNA, and deficiency of DNASE1L3, the main enzyme responsible for chromatin degradation in blood, is also associated with SLE. This association can be found in an ultrarare population of pediatric patients with DNASE1L3 deficiency who develop SLE, adult patients with loss-of-function variants of DNASE1L3 who are at a higher risk for SLE, and patients with sporadic SLE who have neutralizing autoantibodies against DNASE1L3. To mitigate the pathogenic effects of inherited and acquired DNASE1L3 deficiencies, we engineered a long-acting enzyme biologic with dual DNASE1/DNASE1L3 activity that is resistant to DNASE1 and DNASE1L3 inhibitors. Notably, we found that the biologic prevented the development of lupus in Dnase1–/–Dnase1L3–/– double-knockout mice and rescued animals from death in pristane-induced lupus. Finally, we confirmed that the human isoform of the enzyme biologic was not recognized by autoantibodies in SLE and efficiently degraded genomic and mitochondrial cell–free DNA, as well as microparticle DNA, in SLE plasma. Our findings suggest that autoimmune diseases characterized by aberrant DNA accumulation, such as SLE, can be effectively treated with a replacement DNASE tailored to bypass pathogenic mechanisms, both genetic and acquired, that restrict DNASE1L3 activity.

Authors

Paul R. Stabach, Dominique Sims, Eduardo Gomez-Bañuelos, Sandra Zehentmeier, Kris Dammen-Brower, Andrew Bernhisel, Sophia Kujawski, Sam G. Lopez, Michelle Petri, Daniel W. Goldman, Ethan R. Lester, Quan Le, Tayyaba Ishaq, Hana Kim, Shivani Srivastava, Deepika Kumar, Joao P. Pereira, Kevin J. Yarema, Fotios Koumpouras, Felipe Andrade, Demetrios T. Braddock

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Figure 1

Characterization of WT, Dnase1–/–, Dnase1L3–/–, and Dnase1–/–Dnase1L3–/– mice.

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Characterization of WT, Dnase1–/–, Dnase1L3–/–, and Dnase1–/–Dnase1L3–/–...
(A–D) Plasma activity from 2 representative mice from each genotype (WT, Dnase1–/–, Dnase1L3–/–, and Dnase1–/–Dnase1L3–/– [DKO]) against free and chromatin DNA. (A) Plasma from WT mice digests exogenously added plasmid DNA into a smear when imaged on a 1% agarose gel (top) and into a ladder pattern resulting from internucleosome cleavage when incubated with chromatin DNA (bottom). (B) Plasma from Dnase1–/– mice cannot digest exogenously added free DNA but does digest chromatin DNA. (C) Plasma from Dnase1L3–/– mice cannot digest chromatin DNA but does digest free DNA. (D) Plasma from DKO mice cannot digest either chromatin or free DNA. (E and F) Urine activity of WT and DKO mice against free DNA. (E) Degradation of plasmid DNA added to the urine of WT and DKO mice demonstrates the absence of urine DNASE1 activity in DKO mice. (F) Analysis of urine cfDNA by qPCR shows a significant decrease in the Ct in DKO mice, demonstrating increased cfDNA concentrations in DKO mouse urine. (G) Appearance of autoantibodies against ssDNA and dsDNA in 8-week-old DKO mice. DKO mice were found to significantly elevate autoantibodies against ssDNA and dsDNA by 8 weeks of age. *P < 0.05, **P < 0.01, ***P < 0.001, 2-tailed Student’s t test.

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