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Multiantigen pan-sarbecovirus DNA vaccines generate protective T cell immune responses
Jeroen van Bergen, Marcel G.M. Camps, Iris N. Pardieck, Dominique Veerkamp, Wing Yan Leung, Anouk A. Leijs, Sebenzile K. Myeni, Marjolein Kikkert, Ramon Arens, Gerben C. Zondag, Ferry Ossendorp
Jeroen van Bergen, Marcel G.M. Camps, Iris N. Pardieck, Dominique Veerkamp, Wing Yan Leung, Anouk A. Leijs, Sebenzile K. Myeni, Marjolein Kikkert, Ramon Arens, Gerben C. Zondag, Ferry Ossendorp
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Research Article COVID-19 Vaccines

Multiantigen pan-sarbecovirus DNA vaccines generate protective T cell immune responses

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Abstract

SARS-CoV-2 is the third zoonotic coronavirus to cause a major outbreak in humans in recent years, and many more SARS-like coronaviruses with pandemic potential are circulating in several animal species. Vaccines inducing T cell immunity against broadly conserved viral antigens may protect against hospitalization and death caused by outbreaks of such viruses. We report the design and preclinical testing of 2 T cell–based pan-sarbecovirus vaccines, based on conserved regions within viral proteins of sarbecovirus isolates of human and other carrier animals, like bats and pangolins. One vaccine (CoVAX_ORF1ab) encoded antigens derived from nonstructural proteins, and the other (CoVAX_MNS) encoded antigens from structural proteins. Both multiantigen DNA vaccines contained a large set of antigens shared across sarbecoviruses and were rich in predicted and experimentally validated human T cell epitopes. In mice, the multiantigen vaccines generated both CD8+ and CD4+ T cell responses to shared epitopes. Upon encounter of full-length spike antigen, CoVAX_MNS-induced CD4+ T cells were responsible for accelerated CD8+ T cell and IgG Ab responses specific to the incoming spike, irrespective of its sarbecovirus origin. Finally, both vaccines elicited partial protection against a lethal SARS-CoV-2 challenge in human angiotensin-converting enzyme 2–transgenic mice. These results support clinical testing of these universal sarbecovirus vaccines for pandemic preparedness.

Authors

Jeroen van Bergen, Marcel G.M. Camps, Iris N. Pardieck, Dominique Veerkamp, Wing Yan Leung, Anouk A. Leijs, Sebenzile K. Myeni, Marjolein Kikkert, Ramon Arens, Gerben C. Zondag, Ferry Ossendorp

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Figure 4

CoVAX_MNS induces a CD4+ T cell response to a conserved S antigen.

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CoVAX_MNS induces a CD4+ T cell response to a conserved S antigen.
C57BL...
C57BL/6 mice (5 mice/group) were vaccinated intradermally with CoVAX_MNS, from which the reporter antigens had been removed (“norep” in Supplemental Table 5), 3 times at 3-week intervals. Additional control mice (3 mice/group) were mock-vaccinated or vaccinated with DNA encoding SARS-CoV-2 Wuhan S (p393 or p422; see Supplemental Table 5). A week after the final vaccination, spleen cells were cultured for 7 days with peptide-loaded syngeneic DCs (D1) and another 2 days with IL-2, after which the cultured splenocytes were exposed for 6 hours to D1; preloaded (+ peptide), or not (– peptide), with shared sarbecovirus S peptides comprising (A–C) S residues 966–1020 (S991–1020) or (D and E) 893–921 (S893–921); and analyzed by ICS. Activated CD4+ T cells were identified by coexpression of CD40L and TNF after restimulation with these S peptides. (A) Representative dot plots for the S991–1020 peptide. (B–E) Summarized data.

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