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An atypical form of 60S ribosomal subunit in Diamond-Blackfan anemia linked to RPL17 variants
Florence Fellmann, Carol Saunders, Marie-Françoise O’Donohue, David W. Reid, Kelsey A. McFadden, Nathalie Montel-Lehry, Cong Yu, Mingyan Fang, Jianguo Zhang, Beryl Royer-Bertrand, Pietro Farinelli, Narjesse Karboul, Jason R. Willer, Lorraine Fievet, Zahurul Alam Bhuiyan, Alissa L.W. Kleinhenz, Julie Jadeau, Joy Fulbright, Carlo Rivolta, Raffaele Renella, Nicholas Katsanis, Jacques S. Beckmann, Christopher V. Nicchitta, Lydie Da Costa, Erica E. Davis, Pierre-Emmanuel Gleizes
Florence Fellmann, Carol Saunders, Marie-Françoise O’Donohue, David W. Reid, Kelsey A. McFadden, Nathalie Montel-Lehry, Cong Yu, Mingyan Fang, Jianguo Zhang, Beryl Royer-Bertrand, Pietro Farinelli, Narjesse Karboul, Jason R. Willer, Lorraine Fievet, Zahurul Alam Bhuiyan, Alissa L.W. Kleinhenz, Julie Jadeau, Joy Fulbright, Carlo Rivolta, Raffaele Renella, Nicholas Katsanis, Jacques S. Beckmann, Christopher V. Nicchitta, Lydie Da Costa, Erica E. Davis, Pierre-Emmanuel Gleizes
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Research Article Genetics Hematology

An atypical form of 60S ribosomal subunit in Diamond-Blackfan anemia linked to RPL17 variants

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Abstract

Diamond-Blackfan anemia syndrome (DBA) is a ribosomopathy associated with loss-of-function variants in more than 20 ribosomal protein (RP) genes. Here, we report the genetic, functional, and biochemical dissection of 2 multigenerational pedigrees with variants in RPL17, a large ribosomal subunit protein–encoding gene. Affected individuals had clinical features and erythroid proliferation defects consistent with DBA. Further, RPL17/uL22 depletion resulted in anemia and micrognathia in zebrafish larvae, and in vivo complementation studies indicated that RPL17 variants were pathogenic. Lymphoblastoid cell lines (LCLs) derived from patients displayed a ribosomal RNA maturation defect reflecting haploinsufficiency of RPL17. The proteins encoded by RPL17 variants were not incorporated into ribosomes, but 10%–20% of 60S ribosomal subunits contained a short form of 5.8S rRNA (5.8SC), a species that is marginal in normal cells. These atypical 60S subunits were actively engaged in translation. Ribosome profiling showed changes of the translational profile, but those are similar to LCLs bearing RPS19 variants. These results link an additional RP gene to DBA. They show that ribosomes can be modified substantially by RPL17 haploinsufficiency but support the paradigm that translation alterations in DBA are primarily related to insufficient ribosome production rather than to changes in ribosome structure or composition.

Authors

Florence Fellmann, Carol Saunders, Marie-Françoise O’Donohue, David W. Reid, Kelsey A. McFadden, Nathalie Montel-Lehry, Cong Yu, Mingyan Fang, Jianguo Zhang, Beryl Royer-Bertrand, Pietro Farinelli, Narjesse Karboul, Jason R. Willer, Lorraine Fievet, Zahurul Alam Bhuiyan, Alissa L.W. Kleinhenz, Julie Jadeau, Joy Fulbright, Carlo Rivolta, Raffaele Renella, Nicholas Katsanis, Jacques S. Beckmann, Christopher V. Nicchitta, Lydie Da Costa, Erica E. Davis, Pierre-Emmanuel Gleizes

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Figure 4

Analysis of ribosome synthesis show defects in rRNA maturation.

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Analysis of ribosome synthesis show defects in rRNA maturation.
(A) Tota...
(A) Total RNAs extracted from LCLs of DBA cases (gray) or unaffected individuals (black) were analyzed by Northern blot with probes ITS2, 5′-ITS1, 18S, and 28S (positions of the probes in panel C). The ratios of 28S to 18S rRNAs were quantified, normalized to the mean value obtained for controls, and are displayed as log values. (B) Detection of the cryptic pre-rRNA species 36S, 36S-C, and 32.5S with the ITS1-5.8S probe. The intensity profiles shown for the ITS1-5.8S probe were normalized relative to the levels of 28S rRNA. (C) Schematic representation of the pre-rRNAs derived from the 47S primary ribosomal transcript in human cells by endonucleolytic cleavage (horizontal lines) and exonucleolytic processing (Pacman). Impairment of cleavage at site 2 leads to accumulation of the 36S and 36S-C cryptic precursors by direct ITS1 cleavage at site E. Domain C corresponds to a highly conserved domain in ITS1 that blocks exonuclease progression. The positions of the Northern blot probes are indicated below the 47S pre-rRNA and their sequences are listed in Supplemental Table 8.

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