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Antigen receptor stimulation induces purifying selection against pathogenic mitochondrial tRNA mutations
Jingdian Zhang, Camilla Koolmeister, Jinming Han, Roberta Filograna, Leo Hanke, Monika Àdori, Daniel J. Sheward, Sina Teifel, Shreekara Gopalakrishna, Qiuya Shao, Yong Liu, Keying Zhu, Robert A. Harris, Gerald McInerney, Ben Murrell, Mike Aoun, Liselotte Bäckdahl, Rikard Holmdahl, Marcin Pekalski, Anna Wedell, Martin Engvall, Anna Wredenberg, Gunilla B. Karlsson Hedestam, Xaquin Castro Dopico, Joanna Rorbach
Jingdian Zhang, Camilla Koolmeister, Jinming Han, Roberta Filograna, Leo Hanke, Monika Àdori, Daniel J. Sheward, Sina Teifel, Shreekara Gopalakrishna, Qiuya Shao, Yong Liu, Keying Zhu, Robert A. Harris, Gerald McInerney, Ben Murrell, Mike Aoun, Liselotte Bäckdahl, Rikard Holmdahl, Marcin Pekalski, Anna Wedell, Martin Engvall, Anna Wredenberg, Gunilla B. Karlsson Hedestam, Xaquin Castro Dopico, Joanna Rorbach
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Research Article Immunology Metabolism

Antigen receptor stimulation induces purifying selection against pathogenic mitochondrial tRNA mutations

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Abstract

Pathogenic mutations in mitochondrial (mt) tRNA genes that compromise oxidative phosphorylation (OXPHOS) exhibit heteroplasmy and cause a range of multisyndromic conditions. Although mitochondrial disease patients are known to suffer from abnormal immune responses, how heteroplasmic mtDNA mutations affect the immune system at the molecular level is largely unknown. Here, in mice carrying pathogenic C5024T in mt-tRNAAla and in patients with mitochondrial encephalomyopathy, lactic acidosis, stroke-like episodes (MELAS) syndrome carrying A3243G in mt-tRNALeu, we found memory T and B cells to have lower pathogenic mtDNA mutation burdens than their antigen-inexperienced naive counterparts, including after vaccination. Pathogenic burden reduction was less pronounced in myeloid compared with lymphoid lineages, despite C5024T compromising macrophage OXPHOS capacity. Rapid dilution of the C5024T mutation in T and B cell cultures could be induced by antigen receptor–triggered proliferation and was accelerated by metabolic stress conditions. Furthermore, we found C5024T to dysregulate CD8+ T cell metabolic remodeling and IFN-γ production after activation. Together, our data illustrate that the generation of memory lymphocytes shapes the mtDNA landscape, wherein pathogenic variants dysregulate the immune response.

Authors

Jingdian Zhang, Camilla Koolmeister, Jinming Han, Roberta Filograna, Leo Hanke, Monika Àdori, Daniel J. Sheward, Sina Teifel, Shreekara Gopalakrishna, Qiuya Shao, Yong Liu, Keying Zhu, Robert A. Harris, Gerald McInerney, Ben Murrell, Mike Aoun, Liselotte Bäckdahl, Rikard Holmdahl, Marcin Pekalski, Anna Wedell, Martin Engvall, Anna Wredenberg, Gunilla B. Karlsson Hedestam, Xaquin Castro Dopico, Joanna Rorbach

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Figure 4

In vitro induction of mtDNA variant selection by antigen-receptor triggering.

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In vitro induction of mtDNA variant selection by antigen-receptor trigge...
(A) Percentage of C5024T heteroplasmy (%T) is plotted for cells in each division (0–5) sequenced after FACS isolation (n = 7). Wilcoxon’s matched-pairs signed-rank test of %T change relative to the ear for undivided CD4+ T cells versus cells sorted from the last division after 5 days of stimulation (n = 13). (B) %T is plotted for cells in each division (0–7) sequenced after FACS isolation (n = 7). Wilcoxon’s matched-pairs signed-rank test of %T change relative to the ear for undivided CD8+ T cells versus cells sorted from the last division after 5 days of stimulation (n = 11). (C) %T is plotted for cells in each division (0–7) sequenced after FACS isolation (n = 5). Wilcoxon’s matched-pairs signed-rank test of %T change relative to ear for undivided B-2 cells versus cells sorted from the last division after 5 days of stimulation (n = 5). (D) %T is shown for CD8+ T cells TCR stimulated and FACS isolated from different divisions in 5-day galactose (Gal) or glucose (Glu) cultures supplemented with IL-2 (n = 4). (E) Naive C5024T CD4+ and CD8+ T cells were activated and cultured under hypoxic (1% O2) conditions or normoxia (20% O2) for 4 days. Cells from division 1 and cells from the last division were sorted, and the change in %T relative to the ear is displayed. Data from n = 4 C5024T samples. (F) %T in single CD8+ T cell clones from a single adult mouse, compared to the peripheral CD8+ pool and the ear baseline. Data representative of multiple (n = 5) animals. (G) Clonally expanded single CD8+ T cells after 7 days of culture after stimulation were classified as belonging to large (>200 cells/well, n = 27) or small (<200 cells/well, n = 24) clonal populations. Total DNA from each well was then subjected to pyrosequencing. The change in %T relative to ear is plotted for each clonal population and the naive CD8+ T cell pool after activation. Nonparametric 2-tailed Wilcoxon’s matched-pairs signed-rank tests (A–C) or 2-tailed Mann-Whitney tests (D, E, and G) were used to analyze the data.

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