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A single-cell mass cytometry platform to map the effects of preclinical drugs on cartilage homeostasis
Neety Sahu, Fiorella Carla Grandi, Nidhi Bhutani
Neety Sahu, Fiorella Carla Grandi, Nidhi Bhutani
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Research Article Cell biology Therapeutics

A single-cell mass cytometry platform to map the effects of preclinical drugs on cartilage homeostasis

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Abstract

No disease-modifying drug exists for osteoarthritis (OA). Despite success in animal models, candidate drugs continue to fail in clinical trials owing to the unmapped interpatient heterogeneity and disease complexity. We used a single-cell platform based on cytometry by time-of-flight (cyTOF) to precisely outline the effects of candidate drugs on human OA chondrocytes. OA chondrocytes harvested from patients undergoing total knee arthroplasty were treated with 2 drugs, an NF-κB pathway inhibitor, BMS-345541, and a chondroinductive small molecule, kartogenin, that showed preclinical success in animal models for OA. cyTOF conducted with 30 metal isotope–labeled antibodies parsed the effects of the drugs on inflammatory, senescent, and chondroprogenitor cell populations. The NF-κB pathway inhibition decreased the expression of p–NF-κB, HIF2A, and inducible NOS in multiple chondrocyte clusters and significantly depleted 4 p16ink4a-expressing senescent populations, including NOTCH1+STRO1+ chondroprogenitor cells. While kartogenin also affected select p16ink4a-expressing senescent clusters, there was a less discernible effect on chondroprogenitor cell populations. Overall, BMS-345541 elicited a uniform drug response in all patients, while only a few responded to kartogenin. These studies demonstrate that a single-cell cyTOF-based drug screening platform can provide insights into patient response assessment and patient stratification.

Authors

Neety Sahu, Fiorella Carla Grandi, Nidhi Bhutani

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Figure 1

Stratification of OA chondrocytes based on SOX9 expression.

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Stratification of OA chondrocytes based on SOX9 expression.
(A) Schemati...
(A) Schematic outlining the experimental design for profiling OA chondrocytes. Briefly, OA chondrocytes were isolated from patient samples (n = 6), cultured, and treated with DMSO, BMS-345541 (25 μM), or kartogenin (25 μM) for 48 hours followed by staining with metal-conjugated antibodies and data acquisition using cyTOF. (B and C) UMAP of 25 clusters identified by unsupervised hierarchical clustering by FlowSOM is shown for concatenated DMSO-treated samples (n = 8,043 cells per sample) (B) juxtaposed with UMAP of the median SOX9 expression across all clusters (C). (D) Bar plot shows the abundance of the 4 groups stratified by median SOX9 expression in DMSO-treated controls. Each point represents an individual patient (n = 6). Data represent mean ± SD. (E) Heatmap with hierarchical clustering with Euclidean distance measurement for stratification of clusters based on SOX9 expression. (F) UMAP representation of the SOX9lo, SOX9lo/mid, SOX9mid, and SOX9hi groups. (G) Heatmap for the median expression of various panel markers in the groups. Marker columns were z-scored for standardization.

Copyright © 2026 American Society for Clinical Investigation
ISSN 2379-3708

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