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Immune and epithelial determinants of age-related risk and alveolar injury in fatal COVID-19
Michael Chait, Mine M. Yilmaz, Shanila Shakil, Amy W. Ku, Pranay Dogra, Thomas J. Connors, Peter A. Szabo, Joshua I. Gray, Steven B. Wells, Masaru Kubota, Rei Matsumoto, Maya M.L. Poon, Mark E. Snyder, Matthew R. Baldwin, Peter A. Sims, Anjali Saqi, Donna L. Farber, Stuart P. Weisberg
Michael Chait, Mine M. Yilmaz, Shanila Shakil, Amy W. Ku, Pranay Dogra, Thomas J. Connors, Peter A. Szabo, Joshua I. Gray, Steven B. Wells, Masaru Kubota, Rei Matsumoto, Maya M.L. Poon, Mark E. Snyder, Matthew R. Baldwin, Peter A. Sims, Anjali Saqi, Donna L. Farber, Stuart P. Weisberg
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Research Article Aging COVID-19

Immune and epithelial determinants of age-related risk and alveolar injury in fatal COVID-19

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Abstract

Respiratory failure in COVID-19 is characterized by widespread disruption of the lung’s alveolar gas exchange interface. To elucidate determinants of alveolar lung damage, we performed epithelial and immune cell profiling in lungs from 24 COVID-19 autopsies and 43 uninfected organ donors ages 18–92 years. We found marked loss of type 2 alveolar epithelial (T2AE) cells and increased perialveolar lymphocyte cytotoxicity in all fatal COVID-19 cases, even at early stages before typical patterns of acute lung injury are histologically apparent. In lungs from uninfected organ donors, there was also progressive loss of T2AE cells with increasing age, which may increase susceptibility to COVID-19–mediated lung damage in older individuals. In the fatal COVID-19 cases, macrophage infiltration differed according to the histopathological pattern of lung injury. In cases with acute lung injury, we found accumulation of CD4+ macrophages that expressed distinctly high levels of T cell activation and costimulation genes and strongly correlated with increased extent of alveolar epithelial cell depletion and CD8+ T cell cytotoxicity. Together, our results show that T2AE cell deficiency may underlie age-related COVID-19 risk and initiate alveolar dysfunction shortly after infection, and we define immune cell mediators that may contribute to alveolar injury in distinct pathological stages of fatal COVID-19.

Authors

Michael Chait, Mine M. Yilmaz, Shanila Shakil, Amy W. Ku, Pranay Dogra, Thomas J. Connors, Peter A. Szabo, Joshua I. Gray, Steven B. Wells, Masaru Kubota, Rei Matsumoto, Maya M.L. Poon, Mark E. Snyder, Matthew R. Baldwin, Peter A. Sims, Anjali Saqi, Donna L. Farber, Stuart P. Weisberg

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Figure 7

Correlation of CD4+ macrophages with T cell cytotoxicity and alveolar epithelial cell loss in fatal COVID-19.

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Correlation of CD4+ macrophages with T cell cytotoxicity and alveolar ep...
(A) UMAP embeddings of total monocytes (Mo) and macrophages (Mac) from airways of 3 patients with COVID-19 (top left). Feature plot shows normalized expression of CD4 (bottom left). Representative marker genes for each cluster are shown in the normalized and scaled heatmap on the right with color bars corresponding to position on the UMAP. (B and C) The density of CD4+ macrophages (B) and CD4– macrophages (C) in lung tissue is plotted against the density of lung T2AE cells (left) and T1AE cells (right). (D) The density of CD4+ macrophages (left) and CD4– macrophages (right) is plotted against the percentage of GZMB+ cells in the CD8+ T cell subset for all COVID-19 cases (n = 24) and controls (n = 12). The best-fit line with 95% confidence bands and R2 and P values were calculated using simple linear regression analysis.

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