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A unique mutator phenotype reveals complementary oncogenic lesions leading to acute leukemia
Mianmian Yin, Timour Baslan, Robert L. Walker, Yuelin J. Zhu, Amy Freeland, Toshihiro Matsukawa, Sriram Sridharan, André Nussenzweig, Steven C. Pruitt, Scott W. Lowe, Paul S. Meltzer, Peter D. Aplan
Mianmian Yin, Timour Baslan, Robert L. Walker, Yuelin J. Zhu, Amy Freeland, Toshihiro Matsukawa, Sriram Sridharan, André Nussenzweig, Steven C. Pruitt, Scott W. Lowe, Paul S. Meltzer, Peter D. Aplan
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Research Article Genetics Hematology

A unique mutator phenotype reveals complementary oncogenic lesions leading to acute leukemia

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Abstract

Mice homozygous for a hypomorphic allele of DNA replication factor minichromosome maintenance protein 2 (designated Mcm2cre/cre) develop precursor T cell lymphoblastic leukemia/lymphoma (pre-T LBL) with 4–32 small interstitial deletions per tumor. Mice that express a NUP98-HOXD13 (NHD13) transgene develop multiple types of leukemia, including myeloid and T and B lymphocyte. All Mcm2cre/cre NHD13+ mice develop pre-T LBL, and 26% develop an unrelated, concurrent B cell precursor acute lymphoblastic leukemia (BCP-ALL). Copy number alteration (CNA) analysis demonstrated that pre-T LBLs were characterized by homozygous deletions of Pten and Tcf3 and partial deletions of Notch1 leading to Notch1 activation. In contrast, BCP-ALLs were characterized by recurrent deletions involving Pax5 and Ptpn1 and copy number gain of Abl1 and Nup214 resulting in a Nup214-Abl1 fusion. We present a model in which Mcm2 deficiency leads to replicative stress, DNA double strand breaks (DSBs), and resultant CNAs due to errors in DNA DSB repair. CNAs that involve critical oncogenic pathways are then selected in vivo as malignant lymphoblasts because of a fitness advantage. Some CNAs, such as those involving Abl1 and Notch1, represent attractive targets for therapy.

Authors

Mianmian Yin, Timour Baslan, Robert L. Walker, Yuelin J. Zhu, Amy Freeland, Toshihiro Matsukawa, Sriram Sridharan, André Nussenzweig, Steven C. Pruitt, Scott W. Lowe, Paul S. Meltzer, Peter D. Aplan

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Figure 2

Mcm2cre/cre mice show recurrent deletions.

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Mcm2cre/cre mice show recurrent deletions.
(A) Whole-genome view of cop...
(A) Whole-genome view of copy number alteration (CNA) analysis for germline, pre-T LBL (Mcm2cre/cre NHD13–, n = 11 mice; and Mcm2cre/cre NHD13+, n = 18 mice), and AML (Mcm2cre/wt NHD13+, n = 8); samples were more than 70% tumor tissue (thymus or BM) based on flow cytometry. Mouse chromosomes 1–19 and X are indicated. (B and C) Zoomed-in view of (B) Pten (chromosome 19) and (C) Bcl7a (chromosome 5) regions. Red indicates gain; blue indicates loss. Copy number loss is proportional to color. Darker blue is consistent with homozygous loss; lighter blue suggests heterozygous loss. Asterisk indicates the gains or deletions present in germline samples compared with reference C57BL/6 genome (mm9).

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