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Genome-wide suppressor screen identifies USP35/USP38 as therapeutic candidates for ciliopathies
I-Chun Tsai, … , Perciliz L. Tan, Nicholas Katsanis
I-Chun Tsai, … , Perciliz L. Tan, Nicholas Katsanis
Published November 14, 2019
Citation Information: JCI Insight. 2019;4(22):e130516. https://doi.org/10.1172/jci.insight.130516.
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Research Article Genetics Therapeutics

Genome-wide suppressor screen identifies USP35/USP38 as therapeutic candidates for ciliopathies

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Abstract

The ciliopathies are a group of phenotypically overlapping disorders caused by structural or functional defects in the primary cilium. Although disruption of numerous signaling pathways and cellular trafficking events have been implicated in ciliary pathology, treatment options for affected individuals remain limited. Here, we performed a genome-wide RNAi (RNA interference) screen to identify genetic suppressors of BBS4, one of the genes mutated in Bardet-Biedl syndrome (BBS). We discovered 10 genes that, when silenced, ameliorate BBS4-dependent pathology. One of these encodes USP35, a negative regulator of the ubiquitin proteasome system, suggesting that inhibition of a deubiquitinase, and subsequent facilitation of the clearance of signaling components, might ameliorate BBS-relevant phenotypes. Testing of this hypothesis in transient and stable zebrafish genetic models showed this posit to be true; suppression or ablation of usp35 ameliorated hallmark ciliopathy defects including impaired convergent extension (CE), renal tubule convolution, and retinal degeneration with concomitant clearance of effectors such as β-catenin and rhodopsin. Together, our findings reinforce a direct link between proteasome-dependent degradation and ciliopathies and suggest that augmentation of this system might offer a rational path to novel therapeutic modalities.

Authors

I-Chun Tsai, Kevin A. Adams, Joyce A. Tzeng, Omar Shennib, Perciliz L. Tan, Nicholas Katsanis

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Figure 1

Genome-wide siRNA screening to identify the therapeutic candidate target for ciliopathies.

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Genome-wide siRNA screening to identify the therapeutic candidate target...
(A) Experimental design of genome-wide siRNA screening. (B) AXIN2 qPCR was performed as the secondary validation. The same cell line used in the primary screen was transfected with siRNA targeting the 29 hits identified from the primary screening. Compared with the control-siRNA, relative expression level of AXIN2 from triplicated experiments is presented in the box-and-whiskers plot (Tukey’s post hoc test). Asterisks denote the genes that reduce AXIN2 expression significantly (P < 0.05; 2-tailed Student’s t test). (C) Chart of the results from primary screening, secondary validation, and in vivo CE assays.

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