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Fetal exposure to the maternal microbiota in humans and mice
Noelle Younge, Jessica R. McCann, Julie Ballard, Catherine Plunkett, Suhail Akhtar, Félix Araújo-Pérez, Amy Murtha, Debra Brandon, Patrick C. Seed
Noelle Younge, Jessica R. McCann, Julie Ballard, Catherine Plunkett, Suhail Akhtar, Félix Araújo-Pérez, Amy Murtha, Debra Brandon, Patrick C. Seed
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Research Article Development Microbiology

Fetal exposure to the maternal microbiota in humans and mice

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Abstract

Previous studies have demonstrated the presence of microbial DNA in the fetal environment. However, it remains unclear whether this DNA represents viable bacteria and how it relates to the maternal microbiota across body sites. We studied the microbiota of human and mouse dyads to understand these relationships, localize bacteria in the fetus, and demonstrate bacterial viability. In human preterm and full-term mother-infant dyads at the time of cesarean delivery, the oral cavity and meconium of newborn infants born as early as 24 weeks of gestation contained a microbiota that was predicted to originate from in utero sources, including the placenta. Using operative deliveries of pregnant mice under highly controlled, sterile conditions in the laboratory, composition, visualization, and viability of bacteria in the in utero compartment and fetal intestine were demonstrated by 16S rRNA gene sequencing, fluorescence in situ hybridization, and bacterial culture. The composition and predicted source of the fetal gut microbiota shifted between mid- and late gestation. Cultivatable bacteria in the fetal intestine were found during mid-gestation but not late gestation. Our results demonstrate a dynamic, viable mammalian fetal microbiota during in utero development.

Authors

Noelle Younge, Jessica R. McCann, Julie Ballard, Catherine Plunkett, Suhail Akhtar, Félix Araújo-Pérez, Amy Murtha, Debra Brandon, Patrick C. Seed

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Figure 2

Proportions of the infant microbiota attributed to maternal and in utero sources.

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Proportions of the infant microbiota attributed to maternal and in utero...
Predicted sources of the infant microbiota were determined using SourceTracker (26). The proportion of infant microbiota attributed to the maternal and in utero sources are shown for the infant’s oral cavity and feces (i.e., meconium) among preterm (A) and full-term (B) mother-infant dyads. The subjects did not experience labor or rupture of membranes before the delivery, with the exceptions of subject PT3 (preterm labor and rupture of membranes) and subject PT5 (preterm labor without rupture of membranes). The preterm infants PT1, PT2, PT3, and PT5 received antibiotics after birth.

Copyright © 2026 American Society for Clinical Investigation
ISSN 2379-3708

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