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Epigenetic loss of the endoplasmic reticulum–associated degradation inhibitor SVIP induces cancer cell metabolic reprogramming
Pere Llinàs-Arias, Margalida Rosselló-Tortella, Paula López-Serra, Montserrat Pérez-Salvia, Fernando Setién, Silvia Marin, Juan P. Muñoz, Alexandra Junza, Jordi Capellades, María E. Calleja-Cervantes, Humberto J. Ferreira, Manuel Castro de Moura, Marina Srbic, Anna Martínez-Cardús, Carolina de la Torre, Alberto Villanueva, Marta Cascante, Oscar Yanes, Antonio Zorzano, Catia Moutinho, Manel Esteller
Pere Llinàs-Arias, Margalida Rosselló-Tortella, Paula López-Serra, Montserrat Pérez-Salvia, Fernando Setién, Silvia Marin, Juan P. Muñoz, Alexandra Junza, Jordi Capellades, María E. Calleja-Cervantes, Humberto J. Ferreira, Manuel Castro de Moura, Marina Srbic, Anna Martínez-Cardús, Carolina de la Torre, Alberto Villanueva, Marta Cascante, Oscar Yanes, Antonio Zorzano, Catia Moutinho, Manel Esteller
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Research Article Oncology

Epigenetic loss of the endoplasmic reticulum–associated degradation inhibitor SVIP induces cancer cell metabolic reprogramming

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Abstract

The endoplasmic reticulum (ER) of cancer cells needs to adapt to the enhanced proteotoxic stress associated with the accumulation of unfolded, misfolded, and transformation-associated proteins. One way by which tumors thrive in the context of ER stress is by promoting ER-associated degradation (ERAD), although the mechanisms are poorly understood. Here, we show that the small p97/VCP-interacting protein (SVIP), an endogenous inhibitor of ERAD, undergoes DNA hypermethylation–associated silencing in tumorigenesis to achieve this goal. SVIP exhibits tumor suppressor features and its recovery is associated with increased ER stress and growth inhibition. Proteomic and metabolomic analyses show that cancer cells with epigenetic loss of SVIP are depleted in mitochondrial enzymes and oxidative respiration activity. This phenotype is reverted upon SVIP restoration. The dependence of SVIP-hypermethylated cancer cells on aerobic glycolysis and glucose was also associated with sensitivity to an inhibitor of the glucose transporter GLUT1. This could be relevant to the management of tumors carrying SVIP epigenetic loss, because these occur in high-risk patients who manifest poor clinical outcomes. Overall, our study provides insights into how epigenetics helps deal with ER stress and how SVIP epigenetic loss in cancer may be amenable to therapies that target glucose transporters.

Authors

Pere Llinàs-Arias, Margalida Rosselló-Tortella, Paula López-Serra, Montserrat Pérez-Salvia, Fernando Setién, Silvia Marin, Juan P. Muñoz, Alexandra Junza, Jordi Capellades, María E. Calleja-Cervantes, Humberto J. Ferreira, Manuel Castro de Moura, Marina Srbic, Anna Martínez-Cardús, Carolina de la Torre, Alberto Villanueva, Marta Cascante, Oscar Yanes, Antonio Zorzano, Catia Moutinho, Manel Esteller

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Figure 4

Recovery of SVIP expression in cancer cells upregulates mitochondrial metabolism proteins and downregulates a glucose uptake protein.

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Recovery of SVIP expression in cancer cells upregulates mitochondrial me...
(A) Representative Western blot showing the accumulation of polyubiquitinated proteins after SVIP recovery in BB30-HNC cells. (B) Workflow of the SILAC developed to detect protein changes in BB30-HNC cells upon SVIP transfection. (C) Volcano plot summarizes the SILAC results. One hundred ten proteins were significantly upregulated (P < 0.05) (red dots), whereas only 14 were downregulated (blue dots). (D) Validation by Western blot (left) of the upregulation of 4 ERAD target proteins upon transfection of the ERAD inhibitor SVIP. mRNA levels determined by qPCR (right) do not change upon SVIP restoration. (E) Top: Number of proteins represented in general gene clusters of Biological Process Gene Ontology enriched with FDR < 0.05. Bottom: Number of proteins represented in top 10 nonredundant clusters of Biological Process Gene Ontology according to their significance (FDR). Colors depict the level 1 Biological Process category in which they are included according to the top panel of Figure 4D. (F) Western blot (left) shows upregulation of 4 mitochondrial metabolism proteins upon recovery of SVIP in BB30-HNC cells. mRNA levels determined by qPCR (right) do not change upon SVIP transfection. (G) Recovery of SVIP activity causes downregulation of GLUT1 at the protein (left) and mRNA (right) levels, as determined by Western blot and qPCR, respectively. (H) SVIP promoter hypermethylation is significantly associated with loss of the GLUT1 transcript in the Sanger panel of cancer cell lines (n = 862) (left); this correlation was stronger when considering only head and neck cancer, esophageal, cervical, and hematological cell lines (n = 235) (right). Two-tailed Mann-Whitney U test was performed to compare GLUT1 expression between methylated and unmethylated cell lines. qPCRs were analyzed using 2-tailed Student’s t test, and are represented as the mean of triplicates. All Western blots in panels A, D, F, and G were performed in triplicate. *P < 0.05; **P < 0.01. ns, not significant.

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