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Single-cell RNA sequencing identifies TGF-β as a key regenerative cue following LPS-induced lung injury
Kent A. Riemondy, Nicole L. Jansing, Peng Jiang, Elizabeth F. Redente, Austin E. Gillen, Rui Fu, Alyssa J. Miller, Jason R. Spence, Anthony N. Gerber, Jay R. Hesselberth, Rachel L. Zemans
Kent A. Riemondy, Nicole L. Jansing, Peng Jiang, Elizabeth F. Redente, Austin E. Gillen, Rui Fu, Alyssa J. Miller, Jason R. Spence, Anthony N. Gerber, Jay R. Hesselberth, Rachel L. Zemans
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Research Article Pulmonology

Single-cell RNA sequencing identifies TGF-β as a key regenerative cue following LPS-induced lung injury

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Abstract

Many lung diseases result from a failure of efficient regeneration of damaged alveolar epithelial cells (AECs) after lung injury. During regeneration, AEC2s proliferate to replace lost cells, after which proliferation halts and some AEC2s transdifferentiate into AEC1s to restore normal alveolar structure and function. Although the mechanisms underlying AEC2 proliferation have been studied, the mechanisms responsible for halting proliferation and inducing transdifferentiation are poorly understood. To identify candidate signaling pathways responsible for halting proliferation and inducing transdifferentiation, we performed single-cell RNA sequencing on AEC2s during regeneration in a murine model of lung injury induced by intratracheal LPS. Unsupervised clustering revealed distinct subpopulations of regenerating AEC2s: proliferating, cell cycle arrest, and transdifferentiating. Gene expression analysis of these transitional subpopulations revealed that TGF-β signaling was highly upregulated in the cell cycle arrest subpopulation and relatively downregulated in transdifferentiating cells. In cultured AEC2s, TGF-β was necessary for cell cycle arrest but impeded transdifferentiation. We conclude that during regeneration after LPS-induced lung injury, TGF-β is a critical signal halting AEC2 proliferation but must be inactivated to allow transdifferentiation. This study provides insight into the molecular mechanisms regulating alveolar regeneration and the pathogenesis of diseases resulting from a failure of regeneration.

Authors

Kent A. Riemondy, Nicole L. Jansing, Peng Jiang, Elizabeth F. Redente, Austin E. Gillen, Rui Fu, Alyssa J. Miller, Jason R. Spence, Anthony N. Gerber, Jay R. Hesselberth, Rachel L. Zemans

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Figure 6

TGF-β induces AEC2 cell cycle arrest in cultured AEC2s.

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TGF-β induces AEC2 cell cycle arrest in cultured AEC2s.
Primary rat AEC2...
Primary rat AEC2s were cultured in the presence or absence of the TGFβRI inhibitor LY364947 (LY) or the TGF-β–neutralizing antibody 1D11 with or without EdU. (A, D, and F) Quantitative PCR was performed. Data are presented as fold change relative to day 0. (B and E) EdU incorporation is shown. (C) Western blotting of cell lysates for p-Smad3 and actin. Densitometry of p-Smad3 corrected for actin is shown. Experiments were performed at least 3 times, each with 2 technical replicates. Two-tailed t test or 1- or 2-way ANOVA with post hoc analysis for multiple comparisons was performed and corrected for repeated measures. Mean ± SEM is shown. *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001 compared with day 0 (A and D) or day 1 (C) or LY364947 vs. DMSO or 1D11 vs. IgG1 (E and F).

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