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Combined functional genomic and chemical screens identify SETD8 as a therapeutic target in MYC-driven medulloblastoma
Bethany Veo, Etienne Danis, Angela Pierce, Ismail Sola, Dong Wang, Nicholas K. Foreman, Jian Jin, Anqi Ma, Natalie Serkova, Sujatha Venkataraman, Rajeev Vibhakar
Bethany Veo, Etienne Danis, Angela Pierce, Ismail Sola, Dong Wang, Nicholas K. Foreman, Jian Jin, Anqi Ma, Natalie Serkova, Sujatha Venkataraman, Rajeev Vibhakar
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Research Article Oncology

Combined functional genomic and chemical screens identify SETD8 as a therapeutic target in MYC-driven medulloblastoma

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Abstract

Medulloblastoma (MB) is the most prevalent malignant brain tumor in children, accounting for 20% of all childhood brain tumors. The molecular profiling of MB into 4 major subgroups (WNT, SHH, Grp3, and Grp4) emphasizes the heterogeneity of MB and opens paths in which treatments may be targeted to molecularly aggressive and distinct tumors. Current therapeutic strategies for Group 3 MB are challenging and can be accompanied by long-term side effects from treatment. The involvement of altered epigenetic machinery in neoplastic transformation in MB has become more evident. Thus, we performed an epigenomic RNAi and chemical screen and identified SETD8/PRE-SET7/KMT5a as a critical player in maintaining proliferation and cell survival of MB cells. We have found that inhibition of SETD8 effects the migration/invasive ability of MB cells. SETD8 alters H4K20me chromatin occupancy at key genes involved in tumor invasiveness and pluripotency. Interestingly, these results link the aggressive and metastatic behavior of MYC-driven MB with SETD8 activity. Based on our results, we suggest that SETD8 has a critical role mediating Group 3 MB tumorigenesis. Establishing a role for SETD8 as a factor in MYC-driven MB has potential to lead to more effective therapies needed to improve outcomes in high-risk patients.

Authors

Bethany Veo, Etienne Danis, Angela Pierce, Ismail Sola, Dong Wang, Nicholas K. Foreman, Jian Jin, Anqi Ma, Natalie Serkova, Sujatha Venkataraman, Rajeev Vibhakar

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Figure 3

RNA-Seq reveals roles for SETD8 in stem cell maintenance, proliferation, and metastatic pathways.

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RNA-Seq reveals roles for SETD8 in stem cell maintenance, proliferation,...
(A) The top pathways from Ingenuity Pathway Analysis effected by SETD8 knockdown. Bars represent significance of gene enrichment for a given pathway on a –log10(P value) scale. Select pathways are highlighted in red. (B) GSEA D458 shNull vs. shSETD8 RNA-Seq. FDR q value and P value are shown for each plot. Negative enrichment of gene sets involved stem cell maintenance, EMT, metastasis. (C) Volcano plot of normalized enrichment score vs. –log10(P value) for genesets effected by knockdown of SETD8 in D458 cells. Selected genesets are highlighted in blue. See also Supplemental Figure 3.

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