Inferring biological tasks using Pareto analysis of high-dimensional data

Y Hart, H Sheftel, J Hausser, P Szekely… - Nature …, 2015 - nature.com
Y Hart, H Sheftel, J Hausser, P Szekely, NB Ben-Moshe, Y Korem, A Tendler, AE Mayo
Nature methods, 2015nature.com
We present the Pareto task inference method (ParTI; http://www. weizmann. ac.
il/mcb/UriAlon/download/ParTI) for inferring biological tasks from high-dimensional
biological data. Data are described as a polytope, and features maximally enriched closest
to the vertices (or archetypes) allow identification of the tasks the vertices represent. We
demonstrate that human breast tumors and mouse tissues are well described by
tetrahedrons in gene expression space, with specific tumor types and biological functions …
Abstract
We present the Pareto task inference method (ParTI; http://www.weizmann.ac.il/mcb/UriAlon/download/ParTI) for inferring biological tasks from high-dimensional biological data. Data are described as a polytope, and features maximally enriched closest to the vertices (or archetypes) allow identification of the tasks the vertices represent. We demonstrate that human breast tumors and mouse tissues are well described by tetrahedrons in gene expression space, with specific tumor types and biological functions enriched at each of the vertices, suggesting four key tasks.
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